Gene description for HDAC5
Gene name histone deacetylase 5
Gene symbol HDAC5
Other names/aliases HD5
NY-CO-9
Species Homo sapiens
 Database cross references - HDAC5
ExoCarta ExoCarta_10014
Entrez Gene 10014
HGNC 14068
MIM 605315
UniProt Q9UQL6  
 HDAC5 identified in exosomes derived from the following tissue/cell type
Mesenchymal stem cells Unpublished / Not applicable
 Gene ontology annotations for HDAC5
Molecular Function
    transcription corepressor activity GO:0003714 IEA
    transcription regulatory region DNA binding GO:0044212 IDA
    metal ion binding GO:0046872 IEA
    NAD-dependent histone deacetylase activity (H3-K9 specific) GO:0046969 IEA
    transcription factor binding GO:0008134 IPI
    NAD-dependent histone deacetylase activity (H3-K14 specific) GO:0032041 IEA
    NAD-dependent histone deacetylase activity (H4-K16 specific) GO:0046970 IEA
    repressing transcription factor binding GO:0070491 IPI
    protein binding GO:0005515 IPI
    RNA polymerase III transcription factor binding GO:0001025 IPI
    NAD-dependent histone deacetylase activity (H3-K18 specific) GO:0097372 IEA
    protein kinase C binding GO:0005080 IPI
    protein deacetylase activity GO:0033558 IMP
    core promoter binding GO:0001047 IDA
    histone deacetylase binding GO:0042826 IPI
    histone deacetylase activity GO:0004407 IDA
Biological Process
    negative regulation of cell migration involved in sprouting angiogenesis GO:0090051 IMP
    response to drug GO:0042493 IEA
    regulation of skeletal muscle fiber development GO:0048742 IEA
    Notch signaling pathway GO:0007219 TAS
    cellular response to insulin stimulus GO:0032869 NAS
    histone H3-K9 deacetylation GO:1990619 IEA
    chromatin modification GO:0016568 TAS
    negative regulation of myotube differentiation GO:0010832 IMP
    inflammatory response GO:0006954 TAS
    multicellular organismal response to stress GO:0033555 IEA
    histone H4 deacetylation GO:0070933 IEA
    transcription, DNA-templated GO:0006351 IEA
    B cell differentiation GO:0030183 TAS
    chromatin remodeling GO:0006338 TAS
    positive regulation of sequence-specific DNA binding transcription factor activity GO:0051091 IMP
    chromatin silencing GO:0006342 TAS
    heart development GO:0007507 IEA
    regulation of gene expression, epigenetic GO:0040029 IMP
    response to cocaine GO:0042220 IEA
    negative regulation of osteoblast differentiation GO:0045668 IEA
    regulation of myotube differentiation GO:0010830 ISS
    histone deacetylation GO:0016575 IDA
    positive regulation of transcription from RNA polymerase II promoter GO:0045944 IMP
    negative regulation of transcription from RNA polymerase II promoter GO:0000122 IMP
    regulation of histone H3-K9 acetylation GO:2000615 IMP
    regulation of protein binding GO:0043393 IMP
    histone H3-K9 modification GO:0061647 IEA
    protein deacetylation GO:0006476 IMP
    negative regulation of transcription, DNA-templated GO:0045892 TAS
    chromatin organization GO:0006325 TAS
    osteoblast development GO:0002076 IEA
    B cell activation GO:0042113 TAS
Subcellular Localization
    histone deacetylase complex GO:0000118 TAS
    cytosol GO:0005829 IEA
    nucleus GO:0005634 IDA
    Golgi apparatus GO:0005794 IDA
    nucleoplasm GO:0005654 TAS
    cytoplasm GO:0005737 IDA
    nuclear body GO:0016604 IEA
 Experiment description of studies that identified HDAC5 in exosomes
1
Experiment ID 126
ISEV standards
EV Biophysical techniques
GAPDH
EV Cytosolic markers
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry [LTQ-FT Ultra]
PubMed ID Unpublished / Not applicable
Organism Homo sapiens
Experiment description Mesenchymal Stem Cell Exosomes: The Future MSC-based Therapy?
Authors Ruenn Chai Lai, Ronne Wee Yeh Yeo, Soon Sim Tan, Bin Zhang, Yijun Yin, Newman Siu Kwan Sze, Andre Choo, and Sai Kiang Lim
Journal name Mesenchymal Stem Cell Therapy
Publication year 2011
Sample Mesenchymal stem cells
Sample name huES9.E1
Isolation/purification methods HPLC
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Antobody array
Mass spectrometry
 Protein-protein interactions for HDAC5
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 GATA1  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
2 ZNFN1A1  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
3 EEF1G 1937
Two-hybrid Homo sapiens
4 MAP3K7IP2  
Reconstituted Complex Homo sapiens
5 YWHAB 7529
Affinity Capture-Western Homo sapiens
6 YWHAE 7531
Affinity Capture-Western Homo sapiens
7 GATA2  
Affinity Capture-Western Homo sapiens
8 GABARAP  
Two-hybrid Homo sapiens
9 ZNFN1A4  
Affinity Capture-Western Homo sapiens
10 PRKD1 5587
Affinity Capture-Western Homo sapiens
11 ZBTB16  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
12 CTBP1 1487
Reconstituted Complex Homo sapiens
13 MEF2D  
Affinity Capture-Western Homo sapiens
14 NCOR2  
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
15 HDAC3 8841
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
16 NCOR1  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
17 HR  
Affinity Capture-Western Homo sapiens
18 YWHAQ 10971
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
19 CBX5 23468
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
20 TBL1X 6907
Affinity Capture-Western Homo sapiens
21 MEF2A  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
22 NRIP1 8204
Reconstituted Complex Homo sapiens
Co-localization Homo sapiens
23 ZNFN1A3  
Affinity Capture-Western Homo sapiens
24 BCL6  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
25 SUV39H1  
Affinity Capture-Western Homo sapiens
26 IKZF2 22807
Affinity Capture-Western Homo sapiens
27 GPS2  
Affinity Capture-Western Homo sapiens
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