Gene description for DCUN1D1
Gene name DCN1, defective in cullin neddylation 1, domain containing 1
Gene symbol DCUN1D1
Other names/aliases DCNL1
DCUN1L1
RP42
SCCRO
SCRO
Tes3
Species Homo sapiens
 Database cross references - DCUN1D1
ExoCarta ExoCarta_54165
Vesiclepedia VP_54165
Entrez Gene 54165
HGNC 18184
MIM 605905
UniProt Q96GG9  
 DCUN1D1 identified in exosomes derived from the following tissue/cell type
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
 Gene ontology annotations for DCUN1D1
Molecular Function
    protein binding GO:0005515 IPI
    ubiquitin conjugating enzyme binding GO:0031624 IBA
    ubiquitin-like protein binding GO:0032182 IBA
    cullin family protein binding GO:0097602 IBA
    cullin family protein binding GO:0097602 IMP
Biological Process
    regulation of protein ubiquitination GO:0031396 IMP
    protein neddylation GO:0045116 IBA
    regulation of protein neddylation GO:2000434 IMP
    positive regulation of protein neddylation GO:2000436 IMP
Subcellular Localization
    ubiquitin ligase complex GO:0000151 IBA
    ubiquitin ligase complex GO:0000151 IDA
    nucleus GO:0005634 IMP
    nucleoplasm GO:0005654 IDA
    cytoplasm GO:0005737 IMP
    cytosol GO:0005829 IDA
    cytosol GO:0005829 TAS
 Experiment description of studies that identified DCUN1D1 in exosomes
1
Experiment ID 489
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 6
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 490
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
3
Experiment ID 491
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
4
Experiment ID 492
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 9
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
 Protein-protein interactions for DCUN1D1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 KLHL9 55958
Affinity Capture-MS Homo sapiens
2 HNRNPH1 3187
Affinity Capture-MS Homo sapiens
3 KRT77 374454
Affinity Capture-MS Homo sapiens
4 MCM3 4172
Affinity Capture-MS Homo sapiens
5 CYB5D1  
Affinity Capture-MS Homo sapiens
6 CEMIP 57214
Affinity Capture-MS Homo sapiens
7 SNRPG 6637
Affinity Capture-MS Homo sapiens
8 SEP15 9403
Affinity Capture-MS Homo sapiens
9 TCEB1 6921
Affinity Capture-MS Homo sapiens
10 KRT1 3848
Affinity Capture-MS Homo sapiens
11 TMSB10 9168
Cross-Linking-MS (XL-MS) Homo sapiens
12 RPS3A 6189
Affinity Capture-MS Homo sapiens
13 TRRAP 8295
Affinity Capture-MS Homo sapiens
14 KCTD10 83892
Affinity Capture-MS Homo sapiens
15 GDI1 2664
Co-fractionation Homo sapiens
16 UBE2M 9040
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Co-crystal Structure Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
FRET Homo sapiens
17 YWHAE 7531
Affinity Capture-MS Homo sapiens
18 VPRBP 9730
Affinity Capture-MS Homo sapiens
19 ZNF326 284695
Affinity Capture-MS Homo sapiens
20 PRPSAP2 5636
Affinity Capture-MS Homo sapiens
21 NUDCD3 23386
Affinity Capture-MS Homo sapiens
22 HSPA1L 3305
Affinity Capture-MS Homo sapiens
23 RPL9 6133
Affinity Capture-MS Homo sapiens
24 RPL15 6138
Affinity Capture-MS Homo sapiens
25 RNMT 8731
Affinity Capture-MS Homo sapiens
26 SMIM17  
Affinity Capture-MS Homo sapiens
27 HSP90AB1 3326
Affinity Capture-MS Homo sapiens
28 UNC80 285175
Affinity Capture-MS Homo sapiens
29 CALM1 801
Reconstituted Complex Homo sapiens
30 DHX57 90957
Affinity Capture-MS Homo sapiens
31 KLHL23  
Affinity Capture-MS Homo sapiens
32 POLR2I 5438
Affinity Capture-MS Homo sapiens
33 PLOD1 5351
Affinity Capture-MS Homo sapiens
34 TRIM54  
Two-hybrid Homo sapiens
35 HSPA5 3309
Affinity Capture-MS Homo sapiens
36 ILF2 3608
Affinity Capture-MS Homo sapiens
37 KLHDC2  
Affinity Capture-MS Homo sapiens
38 LGALS3BP 3959
Affinity Capture-MS Homo sapiens
39 SPANXN4  
Affinity Capture-MS Homo sapiens
40 UBC 7316
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
41 KBTBD6  
Affinity Capture-MS Homo sapiens
42 C16orf62 57020
Co-fractionation Homo sapiens
43 RPL4 6124
Affinity Capture-MS Homo sapiens
44 HNRNPAB 3182
Affinity Capture-MS Homo sapiens
45 SNRNP70 6625
Affinity Capture-MS Homo sapiens
46 MAPK1 5594
Co-fractionation Homo sapiens
47 PRDX3 10935
Affinity Capture-MS Homo sapiens
48 RBM3 5935
Affinity Capture-MS Homo sapiens
49 HSP90AA1 3320
Affinity Capture-MS Homo sapiens
50 TUBA1C 84790
Affinity Capture-MS Homo sapiens
51 COPS6 10980
Affinity Capture-MS Homo sapiens
52 RAB40C 57799
Affinity Capture-MS Homo sapiens
53 KLHDC10 23008
Affinity Capture-MS Homo sapiens
54 SCRIB 23513
Affinity Capture-MS Homo sapiens
55 COPS5 10987
Affinity Capture-MS Homo sapiens
56 POLL  
Affinity Capture-MS Homo sapiens
57 MRPS23 51649
Affinity Capture-MS Homo sapiens
58 NPM1 4869
Affinity Capture-MS Homo sapiens
59 KRT10 3858
Affinity Capture-MS Homo sapiens
60 KLHL15  
Affinity Capture-MS Homo sapiens
61 EWSR1 2130
Affinity Capture-MS Homo sapiens
62 SOCS5  
Affinity Capture-MS Homo sapiens
63 RHOA 387
Reconstituted Complex Homo sapiens
64 KRT5 3852
Affinity Capture-MS Homo sapiens
65 COPS7A 50813
Affinity Capture-MS Homo sapiens
66 TIAL1 7073
Affinity Capture-MS Homo sapiens
67 SNRPC 6631
Affinity Capture-MS Homo sapiens
68 HSPA7 3311
Affinity Capture-MS Homo sapiens
69 UGGT1 56886
Affinity Capture-MS Homo sapiens
70 SNRPD3 6634
Affinity Capture-MS Homo sapiens
71 C16orf89 146556
Affinity Capture-MS Homo sapiens
72 UBE2F  
Reconstituted Complex Homo sapiens
73 DDX4 54514
Affinity Capture-MS Homo sapiens
74 SSBP1 6742
Affinity Capture-MS Homo sapiens
75 SEC23A 10484
Co-fractionation Homo sapiens
76 CUL1 8454
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
77 GPS1 2873
Affinity Capture-MS Homo sapiens
78 NEDD4 4734
Biochemical Activity Homo sapiens
79 PABPC4 8761
Affinity Capture-MS Homo sapiens
80 EEF1A1 1915
Affinity Capture-MS Homo sapiens
81 RNF11 26994
Two-hybrid Homo sapiens
82 HSPA8 3312
Affinity Capture-MS Homo sapiens
83 YWHAB 7529
Affinity Capture-MS Homo sapiens
84 SNRPE 6635
Affinity Capture-MS Homo sapiens
85 HSPA9 3313
Affinity Capture-MS Homo sapiens
86 RPL36AP37  
Affinity Capture-MS Homo sapiens
87 TCP1 6950
Cross-Linking-MS (XL-MS) Homo sapiens
88 PIP4K2C 79837
Affinity Capture-MS Homo sapiens
89 MAPK3 5595
Co-fractionation Homo sapiens
90 SOCS6  
Affinity Capture-MS Homo sapiens
91 RBX1 9978
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
92 RGSL1  
Affinity Capture-MS Homo sapiens
93 ZCCHC11 23318
Affinity Capture-MS Homo sapiens
94 CUL4B 8450
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-MS Homo sapiens
95 PCBD1 5092
Affinity Capture-MS Homo sapiens
96 RPS10 6204
Affinity Capture-MS Homo sapiens
97 TXN 7295
Affinity Capture-MS Homo sapiens
98 GALE 2582
Co-fractionation Homo sapiens
99 ARHGEF1 9138
Affinity Capture-MS Homo sapiens
100 TCEB1P3  
Affinity Capture-MS Homo sapiens
101 DAZAP2  
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
102 LAPTM5 7805
Two-hybrid Homo sapiens
103 CBR3 874
Affinity Capture-MS Homo sapiens
104 BLOC1S5 63915
Affinity Capture-MS Homo sapiens
105 PABPC1 26986
Affinity Capture-MS Homo sapiens
106 RPL7P32  
Affinity Capture-MS Homo sapiens
107 DDX5 1655
Affinity Capture-MS Homo sapiens
108 SEC23B 10483
Co-fractionation Homo sapiens
109 KRT9 3857
Affinity Capture-MS Homo sapiens
110 KRT75 9119
Affinity Capture-MS Homo sapiens
111 SYNCRIP 10492
Affinity Capture-MS Homo sapiens
112 NCL 4691
Affinity Capture-MS Homo sapiens
113 SMAD2 4087
Two-hybrid Homo sapiens
114 ARRDC3 57561
Two-hybrid Homo sapiens
115 SNRPD1 6632
Affinity Capture-MS Homo sapiens
116 COPS3 8533
Affinity Capture-MS Homo sapiens
117 EIF4G2 1982
Affinity Capture-MS Homo sapiens
118 DHX9 1660
Affinity Capture-MS Homo sapiens
119 CUL2 8453
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
120 CEP76  
Affinity Capture-MS Homo sapiens
121 COPS7B 64708
Affinity Capture-MS Homo sapiens
122 KCTD3  
Affinity Capture-MS Homo sapiens
123 HNRNPA3 220988
Affinity Capture-MS Homo sapiens
124 RPSAP12 387867
Affinity Capture-MS Homo sapiens
125 SLC25A5 292
Affinity Capture-MS Homo sapiens
126 EML1 2009
Affinity Capture-MS Homo sapiens
127 COPS8 10920
Affinity Capture-MS Homo sapiens
128 HNRNPDL 9987
Affinity Capture-MS Homo sapiens
129 HNRNPD 3184
Affinity Capture-MS Homo sapiens
130 RNF40 9810
Co-fractionation Homo sapiens
131 TUBB 203068
Affinity Capture-MS Homo sapiens
132 QPCT 25797
Affinity Capture-MS Homo sapiens
133 COPS2 9318
Affinity Capture-MS Homo sapiens
134 CSTF1 1477
Co-fractionation Homo sapiens
135 CUL3 8452
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Biochemical Activity Homo sapiens
136 RPS2 6187
Affinity Capture-MS Homo sapiens
137 S100A7 6278
Affinity Capture-MS Homo sapiens
138 SDHA 6389
Affinity Capture-MS Homo sapiens
139 TXNDC5 81567
Affinity Capture-MS Homo sapiens
140 SNRPB 6628
Affinity Capture-MS Homo sapiens
141 IGHV3OR15-7  
Affinity Capture-MS Homo sapiens
142 ASB6 140459
Affinity Capture-MS Homo sapiens
143 PHIP 55023
Affinity Capture-MS Homo sapiens
144 ACTBL2 345651
Affinity Capture-MS Homo sapiens
145 RPS6 6194
Affinity Capture-MS Homo sapiens
146 TUBB4B 10383
Affinity Capture-MS Homo sapiens
147 EGFR 1956
Negative Genetic Homo sapiens
148 DCUN1D2 55208
Affinity Capture-MS Homo sapiens
149 MAP3K1 4214
Biochemical Activity Homo sapiens
150 HNRNPA1 3178
Affinity Capture-MS Homo sapiens
151 FUS 2521
Affinity Capture-MS Homo sapiens
152 HNRNPUL1 11100
Affinity Capture-MS Homo sapiens
153 ASB3 51130
Affinity Capture-MS Homo sapiens
154 POLR2A 5430
Affinity Capture-MS Homo sapiens
155 VHL  
Affinity Capture-Western Homo sapiens
156 KLHL13 90293
Affinity Capture-MS Homo sapiens
157 VBP1 7411
Co-fractionation Homo sapiens
158 XPO6 23214
Co-fractionation Homo sapiens
159 CAND1 55832
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
160 AURKB 9212
Reconstituted Complex Homo sapiens
161 TUBA4A 7277
Affinity Capture-MS Homo sapiens
162 FASN 2194
Affinity Capture-MS Homo sapiens
163 RPA3 6119
Proximity Label-MS Homo sapiens
164 DNAJC9 23234
Affinity Capture-MS Homo sapiens
165 RPL7AP27  
Affinity Capture-MS Homo sapiens
166 HSPA1A 3303
Affinity Capture-MS Homo sapiens
167 EEF1A2 1917
Affinity Capture-MS Homo sapiens
168 NFKB1 4790
Affinity Capture-MS Homo sapiens
169 DNAJC10 54431
Affinity Capture-MS Homo sapiens
170 TCEB2 6923
Affinity Capture-MS Homo sapiens
171 DDB1 1642
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
172 RPL18 6141
Affinity Capture-MS Homo sapiens
173 LRRC41 10489
Affinity Capture-MS Homo sapiens
174 SNRNP200 23020
Affinity Capture-MS Homo sapiens
175 CLTC 1213
Affinity Capture-MS Homo sapiens
176 FBF1  
Affinity Capture-MS Homo sapiens
177 TRIM39  
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
178 DDX1 1653
Affinity Capture-MS Homo sapiens
179 TNRC6B  
Affinity Capture-MS Homo sapiens
180 KRT2 3849
Affinity Capture-MS Homo sapiens
181 RPLP2 6181
Affinity Capture-MS Homo sapiens
182 ILF3 3609
Affinity Capture-MS Homo sapiens
183 BAG4  
Affinity Capture-MS Homo sapiens
184 SNRPD2 6633
Affinity Capture-MS Homo sapiens
185 HIF1A 3091
Affinity Capture-Western Homo sapiens
186 SHKBP1  
Affinity Capture-MS Homo sapiens
187 KLHL18  
Affinity Capture-MS Homo sapiens
188 TFG 10342
Affinity Capture-MS Homo sapiens
189 HMGCR  
Affinity Capture-MS Homo sapiens
190 AGL 178
Affinity Capture-MS Homo sapiens
191 TP53BP2  
Two-hybrid Homo sapiens
192 TAF15 8148
Affinity Capture-MS Homo sapiens
193 HNRNPH2 3188
Affinity Capture-MS Homo sapiens
194 TIA1 7072
Affinity Capture-MS Homo sapiens
195 MYEOV2 150678
Affinity Capture-MS Homo sapiens
196 GRB2 2885
Affinity Capture-MS Homo sapiens
197 RPLP0 6175
Affinity Capture-MS Homo sapiens
198 TP53 7157
Affinity Capture-MS Homo sapiens
199 RPL6 6128
Affinity Capture-MS Homo sapiens
200 BTBD9  
Affinity Capture-MS Homo sapiens
201 LSM12 124801
Affinity Capture-MS Homo sapiens
202 ASNS 440
Affinity Capture-MS Homo sapiens
203 TNFAIP1 7126
Affinity Capture-MS Homo sapiens
204 DDX3X 1654
Affinity Capture-MS Homo sapiens
205 BFSP1  
Affinity Capture-MS Homo sapiens
206 KLHL26  
Affinity Capture-MS Homo sapiens
207 RPS8 6202