Gene description for PDCD11
Gene name programmed cell death 11
Gene symbol PDCD11
Other names/aliases ALG-4
ALG4
NFBP
RRP5
Species Homo sapiens
 Database cross references - PDCD11
ExoCarta ExoCarta_22984
Vesiclepedia VP_22984
Entrez Gene 22984
HGNC 13408
MIM 612333
UniProt Q14690  
 PDCD11 identified in sEVs derived from the following tissue/cell type
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
 Gene ontology annotations for PDCD11
Molecular Function
    RNA binding GO:0003723 HDA
    RNA binding GO:0003723 IBA
    protein binding GO:0005515 IPI
    NF-kappaB binding GO:0051059 IPI
Biological Process
    rRNA processing GO:0006364 IEA
Subcellular Localization
    nucleus GO:0005634 IDA
    nucleoplasm GO:0005654 TAS
    nucleolus GO:0005730 IBA
    cytosol GO:0005829 IEA
    small-subunit processome GO:0032040 IBA
 Experiment description of studies that identified PDCD11 in sEVs
1
Experiment ID 489
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 6
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 490
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
3
Experiment ID 491
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
4
Experiment ID 492
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 9
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
 Protein-protein interactions for PDCD11
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 HNRNPH1 3187
Affinity Capture-RNA Homo sapiens
2 FANCC 2176
Affinity Capture-MS Homo sapiens
3 RIT1 6016
Negative Genetic Homo sapiens
4 SSBP4  
Affinity Capture-MS Homo sapiens
5 SLIRP 81892
Proximity Label-MS Homo sapiens
6 SENP3 26168
Affinity Capture-MS Homo sapiens
7 RPL26L1 51121
Affinity Capture-MS Homo sapiens
8 LGR4 55366
Affinity Capture-MS Homo sapiens
9 COIL  
Proximity Label-MS Homo sapiens
10 PAXIP1  
Affinity Capture-MS Homo sapiens
11 KPNA1 3836
Affinity Capture-MS Homo sapiens
12 KLF9 687
Proximity Label-MS Homo sapiens
13 SRPK2 6733
Affinity Capture-MS Homo sapiens
14 LHX2  
Proximity Label-MS Homo sapiens
15 RPL13A 23521
Affinity Capture-MS Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
16 NOP56 10528
Proximity Label-MS Homo sapiens
17 CHCHD1  
Proximity Label-MS Homo sapiens
18 RPL14 9045
Cross-Linking-MS (XL-MS) Homo sapiens
19 PNMAL1  
Affinity Capture-MS Homo sapiens
20 CAND1 55832
Affinity Capture-MS Homo sapiens
21 RSBN1  
Affinity Capture-MS Homo sapiens
22 AEN  
Affinity Capture-MS Homo sapiens
23 SNX6 58533
Cross-Linking-MS (XL-MS) Homo sapiens
24 SOX2  
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
25 CENPA  
Proximity Label-MS Homo sapiens
26 DNAJB6 10049
Proximity Label-MS Homo sapiens
27 APEX1 328
Proximity Label-MS Homo sapiens
28 HIST2H3A 333932
Cross-Linking-MS (XL-MS) Homo sapiens
29 DDX23 9416
Proximity Label-MS Homo sapiens
30 RPL4 6124
Affinity Capture-MS Homo sapiens
31 LLPH  
Affinity Capture-MS Homo sapiens
32 KIF23 9493
Affinity Capture-MS Homo sapiens
33 CCDC137  
Affinity Capture-MS Homo sapiens
34 E2F6 1876
Affinity Capture-MS Homo sapiens
35 PRC1 9055
Affinity Capture-MS Homo sapiens
36 NPM1 4869
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
37 ANOS1 3730
Affinity Capture-MS Homo sapiens
38 FBL 2091
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
39 POLR1E  
Proximity Label-MS Homo sapiens
40 OBSL1 23363
Affinity Capture-MS Homo sapiens
41 ZSCAN31  
Affinity Capture-MS Homo sapiens
42 MRPS26 64949
Proximity Label-MS Homo sapiens
43 ADARB1 104
Affinity Capture-MS Homo sapiens
44 PRKRA 8575
Affinity Capture-MS Homo sapiens
45 EXOSC4 54512
Affinity Capture-MS Homo sapiens
46 EED  
Affinity Capture-MS Homo sapiens
47 SRP68 6730
Affinity Capture-MS Homo sapiens
48 KLF4  
Affinity Capture-MS Homo sapiens
49 RRP8  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
50 AKAP14  
Affinity Capture-MS Homo sapiens
51 MECP2 4204
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
52 H2AFY2 55506
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
53 PKN2 5586
Affinity Capture-MS Homo sapiens
54 MYCN  
Affinity Capture-MS Homo sapiens
55 MAK16  
Affinity Capture-MS Homo sapiens
56 RRP7A 27341
Affinity Capture-MS Homo sapiens
57 CLK3  
Affinity Capture-MS Homo sapiens
58 KIF14 9928
Affinity Capture-MS Homo sapiens
59 APOBEC3C 27350
Affinity Capture-MS Homo sapiens
60 MAPK8IP2  
Affinity Capture-MS Homo sapiens
61 LIN28A  
Affinity Capture-MS Homo sapiens
62 RPP40 10799
Affinity Capture-MS Homo sapiens
63 CHMP4C 92421
Affinity Capture-MS Homo sapiens
64 TOLLIP 54472
Affinity Capture-MS Homo sapiens
65 DDX31  
Affinity Capture-MS Homo sapiens
66 CDKN2AIP  
Affinity Capture-MS Homo sapiens
67 MRPL52  
Affinity Capture-MS Homo sapiens
68 HIST1H4A 8359
Affinity Capture-MS Homo sapiens
69 DDX21 9188
Affinity Capture-MS Homo sapiens
70 NOP9 161424
Affinity Capture-MS Homo sapiens
71 PLEKHO1 51177
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
72 RBM28 55131
Affinity Capture-MS Homo sapiens
73 NOL6 65083
Affinity Capture-MS Homo sapiens
74 RBM19 9904
Affinity Capture-MS Homo sapiens
75 RBM4B  
Affinity Capture-MS Homo sapiens
76 RPF2 84154
Affinity Capture-MS Homo sapiens
77 BAG6 7917
Affinity Capture-MS Homo sapiens
78 SRSF6 6431
Affinity Capture-MS Homo sapiens
79 PURG  
Affinity Capture-MS Homo sapiens
80 NOP2 4839
Affinity Capture-MS Homo sapiens
81 CEP19  
Affinity Capture-MS Homo sapiens
82 RPL5 6125
Affinity Capture-MS Homo sapiens
83 AKR7L 246181
Affinity Capture-MS Homo sapiens
84 RPL18A 6142
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
85 LHX1  
Proximity Label-MS Homo sapiens
86 NTRK1 4914
Affinity Capture-MS Homo sapiens
87 FGF8  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
88 IFI16 3428
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
89 HIST1H1E 3008
Affinity Capture-MS Homo sapiens
90 S100A8 6279
Two-hybrid Homo sapiens
91 RPL36 25873
Affinity Capture-MS Homo sapiens
92 HIST1H1C 3006
Affinity Capture-MS Homo sapiens
93 DDX54 79039
Affinity Capture-MS Homo sapiens
94 ZSCAN32  
Affinity Capture-MS Homo sapiens
95 HECTD1 25831
Affinity Capture-MS Homo sapiens
96 ARL13B 200894
Affinity Capture-MS Homo sapiens
97 C3orf17  
Affinity Capture-MS Homo sapiens
98 SRPK3  
Affinity Capture-MS Homo sapiens
99 MAGEB2 4113
Affinity Capture-MS Homo sapiens
100 SPTY2D1  
Affinity Capture-MS Homo sapiens
101 KLF12  
Proximity Label-MS Homo sapiens
102 FGF13  
Affinity Capture-MS Homo sapiens
103 CD3EAP  
Proximity Label-MS Homo sapiens
104 SCARNA22  
Affinity Capture-RNA Homo sapiens
105 ANLN 54443
Affinity Capture-MS Homo sapiens
106 FGFBP1 9982
Affinity Capture-MS Homo sapiens
107 PAIP2B  
Affinity Capture-MS Homo sapiens
108 TLX2  
Proximity Label-MS Homo sapiens
109 ISG20L2 81875
Affinity Capture-MS Homo sapiens
110 ZBTB2 57621
Affinity Capture-MS Homo sapiens
111 BMS1  
Affinity Capture-MS Homo sapiens
112 RPL31 6160
Proximity Label-MS Homo sapiens
113 UBE2H 7328
Affinity Capture-MS Homo sapiens
114 ABT1 29777
Affinity Capture-MS Homo sapiens
115 RPL13 6137
Affinity Capture-MS Homo sapiens
116 RPL15 6138
Affinity Capture-MS Homo sapiens
117 EIF6 3692
Proximity Label-MS Homo sapiens
118 RC3H2  
Affinity Capture-MS Homo sapiens
119 SIRT7  
Affinity Capture-MS Homo sapiens
120 CD6 923
Affinity Capture-MS Homo sapiens
121 ERCC4  
Affinity Capture-MS Homo sapiens
122 CUL3 8452
Affinity Capture-MS Homo sapiens
123 RPL3 6122
Affinity Capture-MS Homo sapiens
124 HNRNPA1 3178
Affinity Capture-MS Homo sapiens
125 SUZ12  
Affinity Capture-MS Homo sapiens
126 GTF3C4 9329
Affinity Capture-MS Homo sapiens
127 HNRNPCL2 440563
Affinity Capture-MS Homo sapiens
128 ZC3H10  
Affinity Capture-MS Homo sapiens
129 POP7  
Affinity Capture-MS Homo sapiens
130 SOX15  
Proximity Label-MS Homo sapiens
131 ZNF512  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
132 FKBP5 2289
Affinity Capture-MS Homo sapiens
133 FGF3  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
134 DGKZ  
Affinity Capture-MS Homo sapiens
135 RPP25  
Affinity Capture-MS Homo sapiens
136 MYC  
Affinity Capture-MS Homo sapiens
137 RPA3 6119
Proximity Label-MS Homo sapiens
138 CEBPZ  
Affinity Capture-MS Homo sapiens
139 FOSL1  
Affinity Capture-MS Homo sapiens
140 DNAJC9 23234
Proximity Label-MS Homo sapiens
141 RPS14 6208
Affinity Capture-MS Homo sapiens
142 NDC80 10403
Affinity Capture-MS Homo sapiens
143 ETV3  
Proximity Label-MS Homo sapiens
144 RPL23A 6147
Affinity Capture-MS Homo sapiens
145 RPL18 6141
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
146 DDRGK1 65992
Affinity Capture-MS Homo sapiens
147 RNF2  
Affinity Capture-MS Homo sapiens
148 BMI1  
Affinity Capture-MS Homo sapiens
149 ZC3HAV1 56829
Affinity Capture-MS Homo sapiens
150 H2AFB2  
Affinity Capture-MS Homo sapiens
151 NOG 9241
Affinity Capture-MS Homo sapiens
152 LMNA 4000
Proximity Label-MS Homo sapiens
153 ZC3H3  
Affinity Capture-MS Homo sapiens
154 FTSJ3 117246
Affinity Capture-MS Homo sapiens
155 TAF1A  
Affinity Capture-MS Homo sapiens
156 CCDC8  
Affinity Capture-MS Homo sapiens
157 RPS16 6217
Affinity Capture-MS Homo sapiens
158 Cbx1  
Affinity Capture-MS Mus musculus
159 SURF6  
Affinity Capture-MS Homo sapiens
160 PLEKHA4 57664
Affinity Capture-MS Homo sapiens
161 USE1 55850
Affinity Capture-MS Homo sapiens
162 AUH 549
Proximity Label-MS Homo sapiens
163 PARP1 142
Proximity Label-MS Homo sapiens
164 RPS3 6188
Affinity Capture-MS Homo sapiens
165 ILF3 3609
Affinity Capture-MS Homo sapiens
166 RPLP0 6175
Affinity Capture-MS Homo sapiens
167 IFNA14  
Affinity Capture-MS Homo sapiens
168 TP53 7157
Affinity Capture-MS Homo sapiens
169 RRS1 23212
Affinity Capture-MS Homo sapiens
170 BRIX1 55299
Affinity Capture-MS Homo sapiens
171 KIAA0020 9933
Affinity Capture-MS Homo sapiens
172 BUD13  
Affinity Capture-MS Homo sapiens
173 MNDA 4332
Affinity Capture-MS Homo sapiens
174 GRSF1 2926
Proximity Label-MS Homo sapiens
175 USP36  
Affinity Capture-MS Homo sapiens
176 RPP25L  
Affinity Capture-MS Homo sapiens
177 POP4 10775
Affinity Capture-MS Homo sapiens
178 ZNF48  
Affinity Capture-MS Homo sapiens
179 COX8A  
Proximity Label-MS Homo sapiens
180 E2F4  
Affinity Capture-MS Homo sapiens
181 MAGEA9  
Affinity Capture-MS Homo sapiens
182 NIFK 84365
Proximity Label-MS Homo sapiens
183 HNRNPK 3190
Cross-Linking-MS (XL-MS) Homo sapiens
184 WIF1 11197
Affinity Capture-MS Homo sapiens
185 NOC3L 64318
Affinity Capture-MS Homo sapiens
186 DDX27 55661
Affinity Capture-MS Homo sapiens
187 DHX40  
Proximity Label-MS Homo sapiens
188 RBM4 5936
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
189 NEIL1  
Affinity Capture-MS Homo sapiens
190 NOC2L 26155
Affinity Capture-MS Homo sapiens
191 RPS24 6229
Proximity Label-MS Homo sapiens
192 PDIK1L  
Affinity Capture-MS Homo sapiens
193 SUPT6H 6830
Co-fractionation Homo sapiens
194 RPL23AP32 56969
Affinity Capture-MS Homo sapiens
195 RPS6 6194
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
196 RPL8 6132
Affinity Capture-MS Homo sapiens
197 TRMT10B  
Affinity Capture-MS Homo sapiens
198 RPL28 6158
Affinity Capture-MS Homo sapiens
199 PTGES3 10728
Affinity Capture-MS Homo sapiens
200 CUL7 9820
Affinity Capture-MS Homo sapiens
201 KRAS 3845
Negative Genetic Homo sapiens
202 HNRNPU 3192
Affinity Capture-MS Homo sapiens
203 GATAD1  
Affinity Capture-MS Homo sapiens
204 RPL36AL 6166
Affinity Capture-MS Homo sapiens
205 RC3H1 149041
Affinity Capture-MS Homo sapiens
206 ZNF467  
Affinity Capture-MS Homo sapiens
207 RPL17 6139
Affinity Capture-MS Homo sapiens
208 HERC5 51191
Affinity Capture-MS Homo sapiens
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