Gene description for DDX23
Gene name DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
Gene symbol DDX23
Other names/aliases PRPF28
SNRNP100
U5-100K
U5-100KD
prp28
Species Homo sapiens
 Database cross references - DDX23
ExoCarta ExoCarta_9416
Vesiclepedia VP_9416
Entrez Gene 9416
HGNC 17347
MIM 612172
UniProt Q9BUQ8  
 DDX23 identified in sEVs derived from the following tissue/cell type
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Chondrocytes 35931686    
Chondrocytes 35931686    
Retinal pigment epithelial cells 35333565    
Retinal pigment epithelial cells 35333565    
Saliva 19199708    
 Gene ontology annotations for DDX23
Molecular Function
    DNA clamp loader activity GO:0003689 IEA
    RNA binding GO:0003723 HDA
    RNA helicase activity GO:0003724 TAS
    mRNA binding GO:0003729 IBA
    helicase activity GO:0004386 IDA
    protein binding GO:0005515 IPI
    ATP binding GO:0005524 IEA
    ATP hydrolysis activity GO:0016887 IEA
    cohesin loader activity GO:0061775 IEA
    chromatin extrusion motor activity GO:0140584 IEA
    ATP-dependent H3-H4 histone complex chaperone activity GO:0140665 IEA
    ATP-dependent H2AZ histone chaperone activity GO:0140849 IEA
Biological Process
    cis assembly of pre-catalytic spliceosome GO:0000354 IC
    RNA splicing, via transesterification reactions GO:0000375 TAS
    mRNA splicing, via spliceosome GO:0000398 IBA
    mRNA splicing, via spliceosome GO:0000398 IC
    mRNA splicing, via spliceosome GO:0000398 NAS
    mRNA splicing, via spliceosome GO:0000398 TAS
    RNA splicing GO:0008380 TAS
    R-loop processing GO:0062176 IDA
    chromatin looping GO:0140588 IEA
Subcellular Localization
    chromatin GO:0000785 IDA
    nucleus GO:0005634 IDA
    nucleus GO:0005634 NAS
    nucleoplasm GO:0005654 IDA
    nucleoplasm GO:0005654 TAS
    U5 snRNP GO:0005682 IDA
    nucleolus GO:0005730 IDA
    U4/U6 x U5 tri-snRNP complex GO:0046540 IDA
    U4/U6 x U5 tri-snRNP complex GO:0046540 IPI
    extracellular exosome GO:0070062 HDA
    catalytic step 2 spliceosome GO:0071013 IBA
    catalytic step 2 spliceosome GO:0071013 IDA
 Experiment description of studies that identified DDX23 in sEVs
1
Experiment ID 489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 6
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
3
Experiment ID 491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
4
Experiment ID 492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 9
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
5
Experiment ID 497
MISEV standards
✘ Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35931686    
Organism Homo sapiens
Experiment description Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors "Varela-Eirín M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, García-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name Cell Death Dis
Publication year 2022
Sample Chondrocytes
Sample name T/C-28a2
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
6
Experiment ID 498
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35931686    
Organism Homo sapiens
Experiment description Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors "Varela-Eirín M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, García-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name Cell Death Dis
Publication year 2022
Sample Chondrocytes
Sample name T/C-28a2
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
7
Experiment ID 834
MISEV standards
✔
EM
Biophysical techniques
✔
LAMP2|CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35333565    
Organism Homo sapiens
Experiment description LAMP2A regulates the loading of proteins into exosomes
Authors "Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name Sci Adv
Publication year 2022
Sample Retinal pigment epithelial cells
Sample name ARPE-19
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
8
Experiment ID 835
MISEV standards
✔
EM
Biophysical techniques
✔
CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35333565    
Organism Homo sapiens
Experiment description LAMP2A regulates the loading of proteins into exosomes
Authors "Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name Sci Adv
Publication year 2022
Sample Retinal pigment epithelial cells
Sample name ARPE-19
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
9
Experiment ID 66
MISEV standards
✔
IEM
Biophysical techniques
✔
TSG101|Alix|CD63|CD81
Enriched markers
✘ Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 19199708    
Organism Homo sapiens
Experiment description Proteomic analysis of human parotid gland exosomes by multidimensional protein identification technology (MudPIT).
Authors "Gonzalez-Begne M, Lu B, Han X, Hagen FK, Hand AR, Melvin JE, Yates JR"
Journal name JPR
Publication year 2009
Sample Saliva
Sample name Saliva
Isolation/purification methods Differential centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [LTQ]
Western blotting
Immunoelectron Microscopy
 Protein-protein interactions for DDX23
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 ISG15 9636
Affinity Capture-MS Homo sapiens
2 AATF  
Proximity Label-MS Homo sapiens
3 HIST1H4A 8359
Affinity Capture-MS Homo sapiens
4 JADE3  
Proximity Label-MS Homo sapiens
5 XPC  
Proximity Label-MS Homo sapiens
6 ACTC1 70
Proximity Label-MS Homo sapiens
7 BRCA1 672
Affinity Capture-MS Homo sapiens
8 C9orf78 51759
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
9 BRD2  
Proximity Label-MS Homo sapiens
10 PRPF40A 55660
Proximity Label-MS Homo sapiens
11 TAF1  
Proximity Label-MS Homo sapiens
12 UTP3 57050
Proximity Label-MS Homo sapiens
13 APEX1 328
Affinity Capture-RNA Homo sapiens
14 TCEB3 6924
Proximity Label-MS Homo sapiens
15 CCNK  
Proximity Label-MS Homo sapiens
16 GPATCH4 54865
Proximity Label-MS Homo sapiens
17 DHX33  
Proximity Label-MS Homo sapiens
18 PFKL 5211
Co-fractionation Homo sapiens
19 RBM6 10180
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
20 GTF2E2  
Proximity Label-MS Homo sapiens
21 AFF4 27125
Proximity Label-MS Homo sapiens
22 MATR3 9782
Co-fractionation Homo sapiens
23 SF3B1 23451
Affinity Capture-MS Homo sapiens
24 PIP4K2B 8396
Co-fractionation Homo sapiens
25 TFIP11  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
26 HELLS 3070
Proximity Label-MS Homo sapiens
27 FAM207A  
Proximity Label-MS Homo sapiens
28 SNRPD3 6634
Affinity Capture-MS Homo sapiens
29 MECP2 4204
Affinity Capture-MS Homo sapiens
30 SLU7  
Proximity Label-MS Homo sapiens
31 SREK1 140890
Proximity Label-MS Homo sapiens
32 KIF14 9928
Affinity Capture-MS Homo sapiens
33 NOL11  
Proximity Label-MS Homo sapiens
34 RBMX 27316
Proximity Label-MS Homo sapiens
35 CHMP4C 92421
Affinity Capture-MS Homo sapiens
36 BRPF1  
Proximity Label-MS Homo sapiens
37 TCOF1 6949
Proximity Label-MS Homo sapiens
38 WBP4  
Reconstituted Complex Homo sapiens
39 PIP4K2C 79837
Co-fractionation Homo sapiens
40 UTP14A 10813
Proximity Label-MS Homo sapiens
41 TOP2B 7155
Proximity Label-MS Homo sapiens
42 MEPCE 56257
Affinity Capture-MS Homo sapiens
43 MAP1B 4131
Cross-Linking-MS (XL-MS) Homo sapiens
44 SUPT5H 6829
Proximity Label-MS Homo sapiens
45 PDS5A 23244
Proximity Label-MS Homo sapiens
46 IWS1  
Proximity Label-MS Homo sapiens
47 Chmp4c  
Affinity Capture-MS Mus musculus
48 WDR43 23160
Proximity Label-MS Homo sapiens
49 RRP1B 23076
Proximity Label-MS Homo sapiens
50 GTPBP4 23560
Proximity Label-MS Homo sapiens
51 SRPK1 6732
Proximity Label-MS Homo sapiens
52 BCLAF1 9774
Proximity Label-MS Homo sapiens
53 HSPA5 3309
Co-fractionation Homo sapiens
54 RBM39 9584
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
55 SUGP1  
Proximity Label-MS Homo sapiens
56 NOC3L 64318
Proximity Label-MS Homo sapiens
57 MUS81  
Synthetic Growth Defect Homo sapiens
58 GPALPP1  
Proximity Label-MS Homo sapiens
59 LMNB1 4001
Affinity Capture-MS Homo sapiens
60 SIRT7  
Affinity Capture-MS Homo sapiens
61 EPAS1  
Proximity Label-MS Homo sapiens
62 CD2BP2 10421
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
63 REXO4  
Proximity Label-MS Homo sapiens
64 EBNA1BP2 10969
Proximity Label-MS Homo sapiens
65 ANP32E 81611
Proximity Label-MS Homo sapiens
66 SLTM 79811
Proximity Label-MS Homo sapiens
67 RRP15  
Proximity Label-MS Homo sapiens
68 YTHDC1  
Proximity Label-MS Homo sapiens
69 MFAP1  
Proximity Label-MS Homo sapiens
70 RPA3 6119
Affinity Capture-MS Homo sapiens
71 DLST 1743
Affinity Capture-MS Homo sapiens
72 PHF5A 84844
Co-fractionation Homo sapiens
73 HEATR1 55127
Proximity Label-MS Homo sapiens
74 SUPT16H 11198
Proximity Label-MS Homo sapiens
75 GNL3 26354
Proximity Label-MS Homo sapiens
76 DDX55  
Proximity Label-MS Homo sapiens
77 RPS16 6217
Affinity Capture-MS Homo sapiens
78 U2SURP 23350
Proximity Label-MS Homo sapiens
79 DDX46 9879
Proximity Label-MS Homo sapiens
80 PAXBP1  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
81 NUDT21 11051
Proximity Label-MS Homo sapiens
82 EAPP  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
83 BCAS2 10286
Co-fractionation Homo sapiens
84 RNU6ATAC  
Affinity Capture-Western Homo sapiens
85 RRS1 23212
Proximity Label-MS Homo sapiens
86 RBM25 58517
Proximity Label-MS Homo sapiens
87 TCERG1 10915
Proximity Label-MS Homo sapiens
88 NOL8  
Proximity Label-MS Homo sapiens
89 PNISR  
Proximity Label-MS Homo sapiens
90 CWF19L2  
Proximity Label-MS Homo sapiens
91 PUF60 22827
Proximity Label-MS Homo sapiens
92 Prpf3 70767
Affinity Capture-MS Mus musculus
93 IK 3550
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
94 NCL 4691
Proximity Label-MS Homo sapiens
95 ALYREF 10189
Proximity Label-MS Homo sapiens
96 PSMA5 5686
Co-fractionation Homo sapiens
97 SUPT6H 6830
Proximity Label-MS Homo sapiens
98 FAM50A 9130
Proximity Label-MS Homo sapiens
99 PRPF4 9128
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
100 SNW1 22938
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
101 CWC22 57703
Proximity Label-MS Homo sapiens
102 PURA 5813
Co-fractionation Homo sapiens
103 PHF8  
Proximity Label-MS Homo sapiens
104 NVL  
Proximity Label-MS Homo sapiens
105 MORC2  
Proximity Label-MS Homo sapiens
106 KIF23 9493
Affinity Capture-MS Homo sapiens
107 BRDT  
Affinity Capture-MS Homo sapiens
108 Sart1  
Affinity Capture-MS Mus musculus
109 KIAA0020 9933
Proximity Label-MS Homo sapiens
110 PPIL4  
Proximity Label-MS Homo sapiens
111 RPA2 6118
Affinity Capture-MS Homo sapiens
112 THRAP3 9967
Proximity Label-MS Homo sapiens
113 USP39 10713
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
114 NOP56 10528
Proximity Label-MS Homo sapiens
115 RECQL5  
Proximity Label-MS Homo sapiens
116 TERF2IP 54386
Two-hybrid Homo sapiens
117 AAR2 25980
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
118 CWC25 54883
Proximity Label-MS Homo sapiens
119 SNRPF 6636
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
120 RBM5  
Proximity Label-MS Homo sapiens
121 SAFB 6294
Proximity Label-MS Homo sapiens
122 RNPS1 10921
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
123 NOLC1 9221
Proximity Label-MS Homo sapiens
124 WDR83  
Proximity Label-MS Homo sapiens
125 RRP12 23223
Proximity Label-MS Homo sapiens
126 PRC1 9055
Affinity Capture-MS Homo sapiens
127 NPM1 4869
Proximity Label-MS Homo sapiens
128 SRRM2 23524
Proximity Label-MS Homo sapiens
129 OBSL1 23363
Affinity Capture-MS Homo sapiens
130 RSRC1  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
131 RNU4ATAC  
Affinity Capture-Western Homo sapiens
132 C11orf57  
Proximity Label-MS Homo sapiens
133 RBM42  
Affinity Capture-MS Homo sapiens
134 PES1 23481
Proximity Label-MS Homo sapiens
135 UFL1 23376
Affinity Capture-MS Homo sapiens
136 PRPF8 10594
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
137 DDX21 9188
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
138 RBM28 55131
Proximity Label-MS Homo sapiens
139 ACIN1 22985
Proximity Label-MS Homo sapiens
140 LSM7  
Affinity Capture-MS Homo sapiens
141 UBR5 51366
Co-fractionation Homo sapiens
142 DDX10  
Proximity Label-MS Homo sapiens
143 SNRPD1 6632
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
144 NKRF 55922
Proximity Label-MS Homo sapiens
145 ZBTB46  
Affinity Capture-MS Homo sapiens
146 RAD18  
Affinity Capture-MS Homo sapiens
147 RBMX2  
Proximity Label-MS Homo sapiens
148 SCAF11  
Proximity Label-MS Homo sapiens
149 UBTF 7343
Proximity Label-MS Homo sapiens
150 LYAR 55646
Proximity Label-MS Homo sapiens
151 CTR9 9646
Proximity Label-MS Homo sapiens
152 TXNL4A 10907
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
153 DDX27 55661
Proximity Label-MS Homo sapiens
154 SNRPB2 6629
Affinity Capture-MS Homo sapiens
155 RSL1D1 26156
Proximity Label-MS Homo sapiens
156 PPAN-P2RY11  
Proximity Label-MS Homo sapiens
157 TUBB 203068
Co-fractionation Homo sapiens
158 LEO1 123169
Proximity Label-MS Homo sapiens
159 KIN  
Proximity Label-MS Homo sapiens
160 SETD2  
Proximity Label-MS Homo sapiens
161 CIT 11113
Affinity Capture-MS Homo sapiens
162 SLK 9748
Cross-Linking-MS (XL-MS) Homo sapiens
163 TSSC4  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
164 NAF1  
Affinity Capture-MS Homo sapiens
165 RP9  
Proximity Label-MS Homo sapiens
166 EFTUD2 9343
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
167 PIP4K2A 5305
Co-fractionation Homo sapiens
168 NEFM 4741
Cross-Linking-MS (XL-MS) Homo sapiens
169 CEBPZ  
Proximity Label-MS Homo sapiens
170 SET 6418
Proximity Label-MS Homo sapiens
171 CUL7 9820
Affinity Capture-MS Homo sapiens
172 Junb  
Affinity Capture-MS Mus musculus
173 DDRGK1 65992
Affinity Capture-MS Homo sapiens
174 SNRNP200 23020
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
175 PCM1 5108
Two-hybrid Homo sapiens
176 ARGLU1  
Cross-Linking-MS (XL-MS) Homo sapiens
177 FTSJ3 117246
Proximity Label-MS Homo sapiens
178 NKAP 79576
Proximity Label-MS Homo sapiens
179 SURF6  
Proximity Label-MS Homo sapiens
180 H3F3A 3020
Proximity Label-MS Homo sapiens
181 HMGB1 3146
Proximity Label-MS Homo sapiens
182 PHF3  
Proximity Label-MS Homo sapiens
183 KNOP1 400506
Proximity Label-MS Homo sapiens
184 CMTR1 23070
Proximity Label-MS Homo sapiens
185 OTUB1 55611
Affinity Capture-MS Homo sapiens
186 NIFK 84365
Proximity Label-MS Homo sapiens
187 SFSWAP  
Proximity Label-MS Homo sapiens
188 NOC2L 26155
Proximity Label-MS Homo sapiens
189 DHX38 9785
Proximity Label-MS Homo sapiens
190 SSSCA1 10534
Affinity Capture-MS Homo sapiens
191 DDX42 11325
Proximity Label-MS Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
192 KRAS 3845
Negative Genetic Homo sapiens
193 TEX10 54881
Proximity Label-MS Homo sapiens
194 PRMT1 3276
Affinity Capture-MS Homo sapiens
195 CPSF6 11052
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
196 RPP38 10557
Proximity Label-MS Homo sapiens
197 CPSF3 51692
Co-fractionation Homo sapiens
198 GCFC2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
199 NOP14 8602
Proximity Label-MS Homo sapiens
200 MCM7 4176
Co-fractionation Homo sapiens
201 GTF2F1 2962
Proximity Label-MS Homo sapiens
202 SENP3 26168
Proximity Label-MS Homo sapiens
203 SNRPG 6637
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
204 NOP58 51602
Proximity Label-MS Homo sapiens
205 SNRPE 6635
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
206 EEF1G 1937
Co-fractionation Homo sapiens
207 Prpf8 192159
Affinity Capture-MS Mus musculus
208 CENPC  
Proximity Label-MS Homo sapiens
209 SDAD1  
Proximity Label-MS Homo sapiens
210 PRMT6  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
211 XRN2 22803
Proximity Label-MS Homo sapiens
212 HNRNPR 10236
Co-fractionation Homo sapiens
213 LRRC59 55379
Cross-Linking-MS (XL-MS) Homo sapiens
214 RSBN1L  
Proximity Label-MS Homo sapiens
215 ZNF638 27332
Proximity Label-MS Homo sapiens
216 SPAG9 9043
Co-fractionation Homo sapiens
217 MPHOSPH10 10199
Proximity Label-MS Homo sapiens
218 CDK12 51755
Proximity Label-MS Homo sapiens
219 SF3A2 8175
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
220 DDX18 8886
Proximity Label-MS Homo sapiens
221 UTP20 27340
Proximity Label-MS Homo sapiens
222 RBM19 9904
Proximity Label-MS Homo sapiens
223 MDH2 4191
Cross-Linking-MS (XL-MS) Homo sapiens
224 CHD1 1105
Proximity Label-MS Homo sapiens
225 BRIX1 55299
Proximity Label-MS Homo sapiens
226 BSG 682
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
227 DDX31  
Proximity Label-MS Homo sapiens
228 DLD 1738
Affinity Capture-MS Homo sapiens
229 SCAF1  
Proximity Label-MS Homo sapiens
230 FOXC1  
Affinity Capture-MS Homo sapiens
231 WDR70 55100
Proximity Label-MS Homo sapiens
232 PINX1  
Proximity Label-MS Homo sapiens
233 PARK2  
Affinity Capture-MS Homo sapiens
234 NOP2 4839
Proximity Label-MS Homo sapiens
235 RTF1 23168
Proximity Label-MS Homo sapiens
236 RSRC2  
Proximity Label-MS Homo sapiens
237 PPIL2  
Proximity Label-MS Homo sapiens
238 LRWD1  
Proximity Label-MS Homo sapiens
239 SAFB2 9667
Proximity Label-MS Homo sapiens
240 NTRK1 4914
Affinity Capture-MS Homo sapiens
241 LAS1L 81887
Proximity Label-MS Homo sapiens
242 U2AF2 11338
Affinity Capture-MS Homo sapiens
243 NSRP1  
Proximity Label-MS Homo sapiens
244 SNRPN 6638
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
245 NKTR  
Proximity Label-MS Homo sapiens
246 MYBBP1A 10514
Proximity Label-MS Homo sapiens
247 DNTTIP2  
Proximity Label-MS Homo sapiens
248 SF3A3 10946
Co-fractionation Homo sapiens
249 RBM10  
Proximity Label-MS Homo sapiens
250 RBBP6 5930
Proximity Label-MS Homo sapiens
251 CDC73  
Proximity Label-MS Homo sapiens
252 CHERP 10523
Proximity Label-MS Homo sapiens
253 ECT2 1894
Affinity Capture-MS Homo sapiens
254 PHF2  
Proximity Label-MS Homo sapiens
255 RPL21 6144
Cross-Linking-MS (XL-MS) Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
256 DNAJC17  
Affinity Capture-MS Homo sapiens
257 HNRNPA1 3178
Affinity Capture-MS Homo sapiens
258 PDCD11 22984
Proximity Label-MS Homo sapiens
259 TP73  
Affinity Capture-Western Homo sapiens
260 RSBN1  
Proximity Label-MS Homo sapiens
261 ZC3H18  
Proximity Label-MS Homo sapiens
262 CAAP1  
Proximity Label-MS Homo sapiens
263 TP63  
Affinity Capture-Western Homo sapiens
264 CLASRP  
Proximity Label-MS Homo sapiens
265 GPATCH8  
Proximity Label-MS Homo sapiens
266 HSPA9 3313
Cross-Linking-MS (XL-MS) Homo sapiens
267 RBM17 84991
Proximity Label-MS Homo sapiens
268 C3orf17  
Proximity Label-MS Homo sapiens
269 DDX50 79009
Proximity Label-MS Homo sapiens
270 PLEKHA4 57664
Affinity Capture-MS Homo sapiens
271 CLK1  
Two-hybrid Homo sapiens
272 LIG3 3980
Proximity Label-MS Homo sapiens
273 CWC27 10283
Proximity Label-MS Homo sapiens
274 RPA1 6117
Affinity Capture-MS Homo sapiens
275 MEN1 4221
Affinity Capture-MS Homo sapiens
276 SNRPA 6626
Affinity Capture-MS Homo sapiens
277 URB1 9875
Proximity Label-MS Homo sapiens
278 RBM15 64783
Proximity Label-MS Homo sapiens
279 KIFAP3 22920
Affinity Capture-MS Homo sapiens
280 DHX40  
Proximity Label-MS Homo sapiens
281 HDGFRP2 84717
Proximity Label-MS Homo sapiens
282 CDK13 8621
Proximity Label-MS Homo sapiens
283 AKAP17A  
Proximity Label-MS Homo sapiens
284 RPS7 6201
Co-fractionation Homo sapiens
285 ANKRD11 29123
Proximity Label-MS Homo sapiens
286 ERG  
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
287 ZC3H13 23091
Proximity Label-MS Homo sapiens
288 RBM34  
Proximity Label-MS Homo sapiens
289 SSRP1 6749
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
290 DDX56  
Proximity Label-MS Homo sapiens
291 CDK11A 728642
Proximity Label-MS Homo sapiens
292 LUC7L3 51747
Proximity Label-MS Homo sapiens
293 EP300 2033
Affinity Capture-MS Homo sapiens
294 GNL2 29889
Proximity Label-MS Homo sapiens
295 UBE2H 7328
Affinity Capture-MS Homo sapiens
296 RIT1 6016
Negative Genetic Homo sapiens
297 POLDIP3 84271
Proximity Label-MS Homo sapiens
298 DDX24 57062
Proximity Label-MS Homo sapiens
299 COIL  
Proximity Label-MS Homo sapiens
300 PAXIP1  
Affinity Capture-MS Homo sapiens
301 ZNHIT2 741
Affinity Capture-MS Homo sapiens
302 THOC2 57187
Proximity Label-MS Homo sapiens
303 DHX8 1659
Proximity Label-MS Homo sapiens
304 ESF1 51575
Proximity Label-MS Homo sapiens
305 TAF3 83860
Proximity Label-MS Homo sapiens
306 PRPF3  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Proximity Label-MS Homo sapiens
307 SRFBP1  
Proximity Label-MS Homo sapiens
308 BUD13  
Proximity Label-MS Homo sapiens
309 SNRPD2 6633
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
310 WDR36 134430
Proximity Label-MS Homo sapiens
311 USP36  
Proximity Label-MS Homo sapiens
312 KIAA1429 25962
Proximity Label-MS Homo sapiens
313 TOP2A 7153
Proximity Label-MS Homo sapiens
314 RNF10  
Affinity Capture-MS Homo sapiens
315 GTF2F2 2963
Proximity Label-MS Homo sapiens
316 SLC35G2  
Affinity Capture-MS Homo sapiens
317 MRPL12 6182
Cross-Linking-MS (XL-MS) Homo sapiens
318 SNRPC 6631
Affinity Capture-MS Homo sapiens
319 ZNF512B  
Proximity Label-MS Homo sapiens
320 CHD2 1106
Proximity Label-MS Homo sapiens
321 DDX41 51428
Proximity Label-MS Homo sapiens
322 MYCN  
Affinity Capture-MS Homo sapiens
323 MLLT1 4298
Proximity Label-MS Homo sapiens
324 KRI1  
Proximity Label-MS Homo sapiens
325 MSH2 4436
Co-fractionation Homo sapiens
326 PDS5B 23047
Proximity Label-MS Homo sapiens
327 H2AFZ 3015
Proximity Label-MS Homo sapiens
328 PRPF6 24148
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
329 PPIB 5479
Cross-Linking-MS (XL-MS) Homo sapiens
330 STAU1 6780
Affinity Capture-MS Homo sapiens
331 SRSF6 6431
Proximity Label-MS Homo sapiens
332 SRSF4 6429
Proximity Label-MS Homo sapiens
333 DDX5 1655
Proximity Label-MS Homo sapiens
334 IFI16 3428
Affinity Capture-MS Homo sapiens
335 DDX54 79039
Proximity Label-MS Homo sapiens
336 MYH10 4628
Co-fractionation Homo sapiens
337 PRPF31 26121
Co-fractionation Homo sapiens
338 CEBPA  
Protein-peptide Homo sapiens
339 PRKACB 5567
Affinity Capture-MS Homo sapiens
340 GLTSCR2  
Proximity Label-MS Homo sapiens
341 U2AF1 7307
Proximity Label-MS Homo sapiens
342 SRSF11 9295
Proximity Label-MS Homo sapiens
343 SFPQ 6421
Co-fractionation Homo sapiens
344 BMS1  
Proximity Label-MS Homo sapiens
345 PRPF4B 8899
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
346 FANCD2  
Affinity Capture-MS Homo sapiens
347 PNN 5411
Proximity Label-MS Homo sapiens
348 SNRPB 6628
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
349 NAT10 55226
Proximity Label-MS Homo sapiens
350 CERK 64781
Affinity Capture-MS Homo sapiens
351 XAB2 56949
Co-fractionation Homo sapiens
352 THOC5 8563
Co-fractionation Homo sapiens
353 MCM4 4173
Co-fractionation Homo sapiens
354 SUZ12  
Affinity Capture-MS Homo sapiens
355 SART1 9092
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
356 SF3A1 10291
Affinity Capture-MS Homo sapiens
357 PRKCI 5584
Co-fractionation Homo sapiens
358 RBM26 64062
Proximity Label-MS Homo sapiens
359 DKC1 1736
Proximity Label-MS Homo sapiens
360 ARID3A  
Proximity Label-MS Homo sapiens
361 FIP1L1 81608
Proximity Label-MS Homo sapiens
362 SRSF10 10772
Proximity Label-MS Homo sapiens
363 CACTIN  
Proximity Label-MS Homo sapiens
364 DDX52  
Proximity Label-MS Homo sapiens
365 DDX49 54555
Proximity Label-MS Homo sapiens
366 H2AFX 3014
Proximity Label-MS Homo sapiens
367 ZRANB2 9406
Proximity Label-MS Homo sapiens
368 SRRM1 10250
Proximity Label-MS Homo sapiens
369 TUBG1 7283
Proximity Label-MS Homo sapiens
370 ERH 2079
Proximity Label-MS Homo sapiens
371 NOL10  
Proximity Label-MS Homo sapiens
372 WBP11  
Proximity Label-MS Homo sapiens
373 PPIG 9360
Proximity Label-MS Homo sapiens
374 PHRF1  
Proximity Label-MS Homo sapiens
375 PPHLN1  
Proximity Label-MS Homo sapiens
376 SAP18 10284
Proximity Label-MS Homo sapiens
377 BOP1 23246
Proximity Label-MS Homo sapiens
378 TTC14  
Proximity Label-MS Homo sapiens
379 LSM5  
Affinity Capture-MS Homo sapiens
380 CWC15  
Proximity Label-MS Homo sapiens
381 SNRNP40 9410
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
382 TERF1 7013
Two-hybrid Homo sapiens
383 DHX16 8449
Proximity Label-MS Homo sapiens
384 TOP1 7150
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
385 SRSF7 6432
Proximity Label-MS Homo sapiens
386 GTF2E1 2960
Proximity Label-MS Homo sapiens
387 ZNF629 23361
Proximity Label-MS Homo sapiens
388 LSM6 11157
Affinity Capture-MS Homo sapiens
389 C9orf72  
Affinity Capture-MS Homo sapiens
390 PAF1 54623
Proximity Label-MS Homo sapiens
391 WDHD1  
Co-fractionation Homo sapiens
392 CDC5L 988
Proximity Label-MS Homo sapiens
393 PARN  
Proximity Label-MS Homo sapiens
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Perform bioinformatics analysis of your extracellular vesicle data set using FunRich, a open access standalone tool. NEW UPDATED VERSION OF FunRich available for download (12/09/2016) from here