Gene description for RPF2
Gene name ribosome production factor 2 homolog (S. cerevisiae)
Gene symbol RPF2
Other names/aliases BXDC1
bA397G5.4
Species Homo sapiens
 Database cross references - RPF2
ExoCarta ExoCarta_84154
Vesiclepedia VP_84154
Entrez Gene 84154
HGNC 20870
UniProt Q9H7B2  
 RPF2 identified in exosomes derived from the following tissue/cell type
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
 Gene ontology annotations for RPF2
Molecular Function
    RNA binding GO:0003723 HDA
    protein binding GO:0005515 IPI
    5S rRNA binding GO:0008097 IDA
    rRNA binding GO:0019843 IBA
Biological Process
    ribosomal large subunit assembly GO:0000027 IEA
    maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000463 IBA
    ribosomal large subunit biogenesis GO:0042273 IMP
    regulation of signal transduction by p53 class mediator GO:1901796 IMP
    protein localization to nucleolus GO:1902570 IMP
Subcellular Localization
    nucleoplasm GO:0005654 IDA
    chromosome GO:0005694 IDA
    nucleolus GO:0005730 IBA
    nucleolus GO:0005730 IDA
 Experiment description of studies that identified RPF2 in exosomes
1
Experiment ID 489
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 6
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 490
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
3
Experiment ID 491
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
4
Experiment ID 492
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 9
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
 Protein-protein interactions for RPF2
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 RPL11 6135
Affinity Capture-MS Homo sapiens
2 NCAM1 4684
Cross-Linking-MS (XL-MS) Homo sapiens
3 ZNF668  
Affinity Capture-MS Homo sapiens
4 UBE2H 7328
Affinity Capture-MS Homo sapiens
5 LGR4 55366
Affinity Capture-MS Homo sapiens
6 AATF  
Co-fractionation Homo sapiens
7 DNAJC8 22826
Proximity Label-MS Homo sapiens
8 RPS3A 6189
Affinity Capture-MS Homo sapiens
9 RPL30 6156
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
10 SRPK2 6733
Affinity Capture-MS Homo sapiens
11 RIT1 6016
Negative Genetic Homo sapiens
12 RPL13A 23521
Affinity Capture-MS Homo sapiens
13 RPL37A 6168
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
14 RPL10 6134
Affinity Capture-MS Homo sapiens
15 CHCHD1  
Proximity Label-MS Homo sapiens
16 RPL14 9045
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
17 PNMAL1  
Affinity Capture-MS Homo sapiens
18 APP 351
Reconstituted Complex Homo sapiens
19 DNAJB6 10049
Proximity Label-MS Homo sapiens
20 USP36  
Affinity Capture-MS Homo sapiens
21 GPATCH4 54865
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
22 SART3 9733
Affinity Capture-MS Homo sapiens
23 PRR11  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
24 OTUD6B 51633
Affinity Capture-MS Homo sapiens
25 KIF23 9493
Affinity Capture-MS Homo sapiens
26 DDX24 57062
Co-fractionation Homo sapiens
27 CCDC137  
Affinity Capture-MS Homo sapiens
28 PRC1 9055
Affinity Capture-MS Homo sapiens
29 NPM1 4869
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
30 H2AFY2 55506
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
31 ZNF2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
32 SRP14 6727
Affinity Capture-MS Homo sapiens
33 ADARB1 104
Affinity Capture-MS Homo sapiens
34 PRKRA 8575
Affinity Capture-MS Homo sapiens
35 DLG2 1740
Two-hybrid Homo sapiens
36 BRD4 23476
Affinity Capture-MS Homo sapiens
37 DDX18 8886
Co-fractionation Homo sapiens
38 RRP8  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
39 ZNF346  
Affinity Capture-MS Homo sapiens
40 MECP2 4204
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
41 MYCN  
Affinity Capture-MS Homo sapiens
42 OASL 8638
Affinity Capture-MS Homo sapiens
43 MAK16  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
44 OBSL1 23363
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
45 MTERF3  
Proximity Label-MS Homo sapiens
46 GSK3B 2932
Affinity Capture-MS Homo sapiens
47 KIF14 9928
Affinity Capture-MS Homo sapiens
48 PES1 23481
Co-fractionation Homo sapiens
49 LIN28A  
Affinity Capture-MS Homo sapiens
50 CCDC140  
Affinity Capture-MS Homo sapiens
51 CHMP4C 92421
Affinity Capture-MS Homo sapiens
52 KIAA0020 9933
Co-fractionation Homo sapiens
53 NOP2 4839
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
54 UTP14A 10813
Co-fractionation Homo sapiens
55 DDX21 9188
Affinity Capture-MS Homo sapiens
56 RPL4 6124
Affinity Capture-MS Homo sapiens
57 RBM28 55131
Affinity Capture-MS Homo sapiens
58 TUB  
Affinity Capture-MS Homo sapiens
59 ZBTB47  
Affinity Capture-MS Homo sapiens
60 ERGIC2 51290
Proximity Label-MS Homo sapiens
61 RBM4B  
Affinity Capture-MS Homo sapiens
62 APOBEC3C 27350
Affinity Capture-MS Homo sapiens
63 SRSF6 6431
Affinity Capture-MS Homo sapiens
64 PURG  
Affinity Capture-MS Homo sapiens
65 ZBTB48  
Affinity Capture-MS Homo sapiens
66 RPL31 6160
Affinity Capture-MS Homo sapiens
67 IFI16 3428
Affinity Capture-MS Homo sapiens
68 U2AF2 11338
Affinity Capture-MS Homo sapiens
69 REXO4  
Affinity Capture-MS Homo sapiens
70 RPL36 25873
Affinity Capture-MS Homo sapiens
71 HIST1H1C 3006
Affinity Capture-MS Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
72 LYAR 55646
Affinity Capture-MS Homo sapiens
73 PML 5371
Affinity Capture-MS Homo sapiens
74 RPLP0 6175
Affinity Capture-MS Homo sapiens
75 SRPK3  
Affinity Capture-MS Homo sapiens
76 MAGEB2 4113
Affinity Capture-MS Homo sapiens
77 MYBBP1A 10514
Affinity Capture-MS Homo sapiens
78 GTPBP4 23560
Co-fractionation Homo sapiens
79 GLTSCR2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
80 RPF1  
Co-fractionation Homo sapiens
81 RSL1D1 26156
Affinity Capture-MS Homo sapiens
82 CNBP 7555
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
83 ANLN 54443
Affinity Capture-MS Homo sapiens
84 FGFBP1 9982
Affinity Capture-MS Homo sapiens
85 ATG16L1 55054
Affinity Capture-MS Homo sapiens
86 ZBTB2 57621
Affinity Capture-MS Homo sapiens
87 FANCD2  
Affinity Capture-MS Homo sapiens
88 ABT1 29777
Affinity Capture-MS Homo sapiens
89 PTPN6 5777
Affinity Capture-MS Homo sapiens
90 RC3H2  
Affinity Capture-MS Homo sapiens
91 ECT2 1894
Affinity Capture-MS Homo sapiens
92 SIRT7  
Affinity Capture-MS Homo sapiens
93 RPL35 11224
Affinity Capture-MS Homo sapiens
94 SRSF1 6426
Affinity Capture-MS Homo sapiens
95 HIST1H1E 3008
Affinity Capture-MS Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
96 NPM3 10360
Affinity Capture-MS Homo sapiens
97 ZNF71  
Affinity Capture-MS Homo sapiens
98 SRSF5 6430
Affinity Capture-MS Homo sapiens
99 RPL3 6122
Affinity Capture-MS Homo sapiens
100 EBNA1BP2 10969
Co-fractionation Homo sapiens
101 FBXO6 26270
Affinity Capture-MS Homo sapiens
102 PDCD11 22984
Affinity Capture-MS Homo sapiens
103 RRP15  
Co-fractionation Homo sapiens
104 HNRNPCL2 440563
Affinity Capture-MS Homo sapiens
105 ZC3H10  
Affinity Capture-MS Homo sapiens
106 NXF1 10482
Affinity Capture-RNA Homo sapiens
107 RPL28 6158
Affinity Capture-MS Homo sapiens
108 C12orf65  
Proximity Label-MS Homo sapiens
109 FKBP5 2289
Affinity Capture-MS Homo sapiens
110 CBX6  
Affinity Capture-MS Homo sapiens
111 DKC1 1736
Co-fractionation Homo sapiens
112 MYC  
Affinity Capture-MS Homo sapiens
113 RPA3 6119
Proximity Label-MS Homo sapiens
114 ZNF692  
Affinity Capture-MS Homo sapiens
115 DNAJC9 23234
Proximity Label-MS Homo sapiens
116 EGFR 1956
Negative Genetic Homo sapiens
117 RPS14 6208
Affinity Capture-MS Homo sapiens
118 HIST1H1A 3024
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
119 RPL18 6141
Affinity Capture-MS Homo sapiens
120 DDRGK1 65992
Affinity Capture-MS Homo sapiens
121 RNF2  
Affinity Capture-MS Homo sapiens
122 ILF2 3608
Affinity Capture-MS Homo sapiens
123 HIST1H1T 3010
Affinity Capture-MS Homo sapiens
124 ZC3H3  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
125 FTSJ3 117246
Co-fractionation Homo sapiens
126 RPL15 6138
Affinity Capture-MS Homo sapiens
127 RPL13 6137
Affinity Capture-MS Homo sapiens
128 DHX15 1665
Co-fractionation Homo sapiens
129 SURF6  
Affinity Capture-MS Homo sapiens
130 MKRN1 23608
Affinity Capture-MS Homo sapiens
131 RBM34  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
132 HMGN4  
Affinity Capture-MS Homo sapiens
133 PDGFB  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
134 RRS1 23212
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
135 MNDA 4332
Affinity Capture-MS Homo sapiens
136 RNF151  
Affinity Capture-MS Homo sapiens
137 MEN1 4221
Affinity Capture-MS Homo sapiens
138 DGCR8  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
139 KNOP1 400506
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
140 SMURF1 57154
Affinity Capture-MS Homo sapiens
141 ZNF48  
Affinity Capture-MS Homo sapiens
142 SHFM1 7979
Affinity Capture-MS Homo sapiens
143 NSA2  
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
144 G3BP2 9908
Affinity Capture-MS Homo sapiens
145 MKI67  
Affinity Capture-MS Homo sapiens
146 NIFK 84365
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
147 PRDM5  
Affinity Capture-MS Homo sapiens
148 UFL1 23376
Affinity Capture-MS Homo sapiens
149 KRR1 11103
Co-fractionation Homo sapiens
150 RBM4 5936
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
151 NEIL1  
Affinity Capture-MS Homo sapiens
152 NOC2L 26155
Co-fractionation Homo sapiens
153 NCL 4691
Affinity Capture-MS Homo sapiens
154 IL17B 27190
Affinity Capture-MS Homo sapiens
155 RPL7A 6130
Affinity Capture-MS Homo sapiens
156 RPS8 6202
Affinity Capture-MS Homo sapiens
157 RPL8 6132
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
158 GRSF1 2926
Proximity Label-MS Homo sapiens
159 CUL7 9820
Affinity Capture-MS Homo sapiens
160 KRAS 3845
Negative Genetic Homo sapiens
161 RC3H1 149041
Affinity Capture-MS Homo sapiens
162 ZNF467  
Affinity Capture-MS Homo sapiens
163 DDX56  
Co-fractionation Homo sapiens
164 EP300 2033
Affinity Capture-MS Homo sapiens
View the network image/svg+xml
 Pathways in which RPF2 is involved
No pathways found





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