Gene description for DDX50
Gene name DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
Gene symbol DDX50
Other names/aliases GU2
GUB
RH-II/GuB
mcdrh
Species Homo sapiens
 Database cross references - DDX50
ExoCarta ExoCarta_79009
Vesiclepedia VP_79009
Entrez Gene 79009
HGNC 17906
MIM 610373
UniProt Q9BQ39  
 DDX50 identified in exosomes derived from the following tissue/cell type
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Thymus 23844026    
 Gene ontology annotations for DDX50
Molecular Function
    DNA clamp loader activity GO:0003689 IEA
    RNA binding GO:0003723 HDA
    RNA helicase activity GO:0003724 IBA
    mRNA binding GO:0003729 IBA
    ATP binding GO:0005524 IEA
    ATP hydrolysis activity GO:0016887 IEA
    cohesin loader activity GO:0061775 IEA
    chromatin extrusion motor activity GO:0140584 IEA
    ATP-dependent H3-H4 histone complex chaperone activity GO:0140665 IEA
    ATP-dependent H2AZ histone chaperone activity GO:0140849 IEA
Biological Process
    chromatin remodeling GO:0006338 IEA
    chromatin looping GO:0140588 IEA
Subcellular Localization
    nucleolus GO:0005730 IBA
    nucleolus GO:0005730 IDA
    plasma membrane GO:0005886 IDA
    membrane GO:0016020 HDA
 Experiment description of studies that identified DDX50 in exosomes
1
Experiment ID 489
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 6
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 490
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
3
Experiment ID 491
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
4
Experiment ID 492
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 9
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
5
Experiment ID 217
MISEV standards
EM
Biophysical techniques
TSG101|CD81|CD9|CD63
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23844026    
Organism Homo sapiens
Experiment description Characterization of human thymic exosomes.
Authors "Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O."
Journal name PLoS One
Publication year 2013
Sample Thymus
Sample name Normal-Thymus
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for DDX50
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 CD3EAP  
Proximity Label-MS Homo sapiens
2 CDC14B 8555
Proximity Label-MS Homo sapiens
3 SLFN11 91607
Affinity Capture-MS Homo sapiens
4 RPA2 6118
Proximity Label-MS Homo sapiens
5 ZNF668  
Affinity Capture-MS Homo sapiens
6 UBE2H 7328
Affinity Capture-MS Homo sapiens
7 H1FNT  
Affinity Capture-MS Homo sapiens
8 ZNF346  
Affinity Capture-MS Homo sapiens
9 RPL30 6156
Affinity Capture-MS Homo sapiens
10 SRPK2 6733
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
11 PUF60 22827
Two-hybrid Homo sapiens
12 TARDBP 23435
Affinity Capture-MS Homo sapiens
13 BTF3 689
Affinity Capture-MS Homo sapiens
14 RPL13A 23521
Affinity Capture-MS Homo sapiens
15 NOP56 10528
Co-fractionation Homo sapiens
Proximity Label-MS Homo sapiens
16 RPS19 6223
Affinity Capture-MS Homo sapiens
17 RPL10 6134
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
18 KIF20A 10112
Affinity Capture-MS Homo sapiens
19 CAND1 55832
Affinity Capture-MS Homo sapiens
20 PTPN1 5770
Proximity Label-MS Homo sapiens
21 UNKL  
Two-hybrid Homo sapiens
22 RBM34  
Affinity Capture-MS Homo sapiens
23 WDR26 80232
Affinity Capture-MS Homo sapiens
24 SOX2  
Proximity Label-MS Homo sapiens
25 APEX1 328
Proximity Label-MS Homo sapiens
26 DDX23 9416
Proximity Label-MS Homo sapiens
27 RPL10A 4736
Affinity Capture-MS Homo sapiens
28 BTBD1  
Affinity Capture-MS Homo sapiens
29 TFAM 7019
Proximity Label-MS Homo sapiens
30 KIF23 9493
Affinity Capture-MS Homo sapiens
31 RANBP10 57610
Affinity Capture-MS Homo sapiens
32 ZNF524  
Affinity Capture-MS Homo sapiens
33 CHCHD2  
Affinity Capture-MS Homo sapiens
34 PRC1 9055
Affinity Capture-MS Homo sapiens
35 NPM1 4869
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
36 SRRM2 23524
Affinity Capture-MS Homo sapiens
37 FBL 2091
Proximity Label-MS Homo sapiens
38 OBSL1 23363
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
39 RPS9 6203
Affinity Capture-MS Homo sapiens
40 MKLN1  
Affinity Capture-MS Homo sapiens
41 ADARB1 104
Affinity Capture-MS Homo sapiens
42 PRKRA 8575
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
43 EED  
Affinity Capture-MS Homo sapiens
44 SLC25A46 91137
Proximity Label-MS Homo sapiens
45 TNFRSF13B  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
46 RRP8  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
47 CACTIN  
Affinity Capture-MS Homo sapiens
48 MECP2 4204
Affinity Capture-MS Homo sapiens
49 DHX57 90957
Affinity Capture-MS Homo sapiens
50 MYCN  
Affinity Capture-MS Homo sapiens
51 MAPRE1 22919
Affinity Capture-MS Homo sapiens
52 OASL 8638
Affinity Capture-MS Homo sapiens
53 RPL19 6143
Affinity Capture-MS Homo sapiens
54 KIF14 9928
Affinity Capture-MS Homo sapiens
55 LIN28A  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
56 ZNF579  
Affinity Capture-MS Homo sapiens
57 CPEB1  
Affinity Capture-MS Homo sapiens
58 CHMP4C 92421
Affinity Capture-MS Homo sapiens
59 PHF10  
Affinity Capture-MS Homo sapiens
60 HIST1H4A 8359
Affinity Capture-MS Homo sapiens
61 DDX21 9188
Affinity Capture-MS Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
62 TLX3  
Proximity Label-MS Homo sapiens
63 RPL4 6124
Affinity Capture-MS Homo sapiens
64 TARBP2  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
65 RPS10 6204
Affinity Capture-MS Homo sapiens
66 ARMC8 25852
Affinity Capture-MS Homo sapiens
67 RBM4B  
Affinity Capture-MS Homo sapiens
68 STAU1 6780
Affinity Capture-MS Homo sapiens
69 SRSF6 6431
Affinity Capture-MS Homo sapiens
70 PURG  
Affinity Capture-MS Homo sapiens
71 HIST1H2AM 8336
Affinity Capture-MS Homo sapiens
72 RPL18A 6142
Affinity Capture-MS Homo sapiens
73 ZNF638 27332
Affinity Capture-MS Homo sapiens
74 CHMP4B 128866
Affinity Capture-MS Homo sapiens
75 LHX2  
Proximity Label-MS Homo sapiens
76 BARD1 580
Affinity Capture-MS Homo sapiens
77 AIM2  
Affinity Capture-MS Homo sapiens
78 IFI16 3428
Affinity Capture-MS Homo sapiens
79 HIST1H1E 3008
Affinity Capture-MS Homo sapiens
80 GTF3C2  
Affinity Capture-MS Homo sapiens
81 RPL36 25873
Affinity Capture-MS Homo sapiens
82 ARRDC3 57561
Affinity Capture-MS Homo sapiens
83 DDX54 79039
Affinity Capture-MS Homo sapiens
84 HECTD1 25831
Affinity Capture-MS Homo sapiens
85 MRPL11 65003
Proximity Label-MS Homo sapiens
86 GID8 54994
Affinity Capture-MS Homo sapiens
87 MAGEB2 4113
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
88 FGF13  
Affinity Capture-MS Homo sapiens
89 KLF4  
Affinity Capture-MS Homo sapiens
90 KDF1  
Affinity Capture-MS Homo sapiens
91 RNASEH1 246243
Affinity Capture-MS Homo sapiens
92 SCARNA22  
Affinity Capture-RNA Homo sapiens
93 ANLN 54443
Affinity Capture-MS Homo sapiens
94 FGFBP1 9982
Affinity Capture-MS Homo sapiens
95 TLX2  
Proximity Label-MS Homo sapiens
96 ZBTB2 57621
Affinity Capture-MS Homo sapiens
97 RPL31 6160
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
98 MRRF  
Proximity Label-MS Homo sapiens
99 FANCD2  
Affinity Capture-MS Homo sapiens
100 MRPS12  
Proximity Label-MS Homo sapiens
101 SRSF7 6432
Affinity Capture-MS Homo sapiens
102 TARS 6897
Cross-Linking-MS (XL-MS) Homo sapiens
103 GID4  
Affinity Capture-MS Homo sapiens
104 LMNB1 4001
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
105 RC3H2  
Affinity Capture-MS Homo sapiens
106 ECT2 1894
Affinity Capture-MS Homo sapiens
107 RPL35 11224
Affinity Capture-MS Homo sapiens
108 KMT2E  
Affinity Capture-MS Homo sapiens
109 SRSF1 6426
Affinity Capture-MS Homo sapiens
110 CD274 29126
Affinity Capture-MS Homo sapiens
111 NPM3 10360
Affinity Capture-MS Homo sapiens
112 CUL3 8452
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
113 RPS8 6202
Affinity Capture-MS Homo sapiens
114 SRSF5 6430
Affinity Capture-MS Homo sapiens
115 RPL3 6122
Affinity Capture-MS Homo sapiens
116 Pcbp1 23983
Two-hybrid Mus musculus
117 ZC3H10  
Affinity Capture-MS Homo sapiens
118 NXF1 10482
Two-hybrid Homo sapiens
119 SOX15  
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
120 AURKB 9212
Affinity Capture-MS Homo sapiens
121 RPL28 6158
Affinity Capture-MS Homo sapiens
122 C12orf65  
Proximity Label-MS Homo sapiens
123 RPL17 6139
Affinity Capture-MS Homo sapiens
124 RPA3 6119
Proximity Label-MS Homo sapiens
125 INO80B 83444
Affinity Capture-MS Homo sapiens
126 NOL12 79159
Affinity Capture-MS Homo sapiens
127 RNF151  
Affinity Capture-MS Homo sapiens
128 GNLY  
Affinity Capture-MS Homo sapiens
129 SIRT6  
Affinity Capture-MS Homo sapiens
130 HIST1H1A 3024
Affinity Capture-MS Homo sapiens
131 DDRGK1 65992
Affinity Capture-MS Homo sapiens
132 RNF2  
Affinity Capture-MS Homo sapiens
133 Rpl35 66489
Affinity Capture-MS Mus musculus
134 EIF2B1 1967
Affinity Capture-MS Homo sapiens
135 RPL11 6135
Affinity Capture-MS Homo sapiens
136 NEUROG3  
Affinity Capture-MS Homo sapiens
137 ZC3H3  
Affinity Capture-MS Homo sapiens
138 CCDC8  
Affinity Capture-MS Homo sapiens
139 RPS16 6217
Affinity Capture-MS Homo sapiens
140 EEF1A1 1915
Cross-Linking-MS (XL-MS) Homo sapiens
141 ZNF574  
Affinity Capture-MS Homo sapiens
142 RPL13 6137
Affinity Capture-MS Homo sapiens
143 DEPDC1B 55789
Affinity Capture-MS Homo sapiens
144 SURF6  
Affinity Capture-MS Homo sapiens
145 PLEKHA4 57664
Affinity Capture-MS Homo sapiens
146 TSFM 10102
Proximity Label-MS Homo sapiens
147 AUH 549
Proximity Label-MS Homo sapiens
148 PARP1 142
Proximity Label-MS Homo sapiens
149 BKRF1  
Affinity Capture-MS
150 HDGF 3068
Affinity Capture-MS Homo sapiens
151 RPLP0 6175
Affinity Capture-MS Homo sapiens
152 CPSF6 11052
Affinity Capture-MS Homo sapiens
153 TP53 7157
Synthetic Growth Defect Homo sapiens
Affinity Capture-MS Homo sapiens
154 ZFP91 80829
Affinity Capture-MS Homo sapiens
155 ICT1 3396
Proximity Label-MS Homo sapiens
156 MNDA 4332
Affinity Capture-MS Homo sapiens
157 USP36  
Affinity Capture-MS Homo sapiens
158 DGCR8  
Affinity Capture-MS Homo sapiens
159 RANBP9 10048
Affinity Capture-MS Homo sapiens
160 CHD4 1108
Affinity Capture-MS Homo sapiens
161 H2AFB3  
Affinity Capture-MS Homo sapiens
162 C21orf33  
Proximity Label-MS Homo sapiens
163 MKI67  
Affinity Capture-MS Homo sapiens
164 NIFK 84365
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
165 ESR1  
Affinity Capture-MS Homo sapiens
166 UFL1 23376
Affinity Capture-MS Homo sapiens
167 KRR1 11103
Affinity Capture-MS Homo sapiens
168 BTBD2  
Affinity Capture-MS Homo sapiens
169 NEIL1  
Affinity Capture-MS Homo sapiens
170 RPS24 6229
Proximity Label-MS Homo sapiens
171 NCL 4691
Affinity Capture-MS Homo sapiens
172 ARHGAP36  
Affinity Capture-MS Homo sapiens
173 RPL7A 6130
Affinity Capture-MS Homo sapiens
174 RPS6 6194
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
175 RPL8 6132
Affinity Capture-MS Homo sapiens
176 GRSF1 2926
Proximity Label-MS Homo sapiens
177 C1QBP 708
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
178 MAEA 10296
Affinity Capture-MS Homo sapiens
179 CUL7 9820
Affinity Capture-MS Homo sapiens
180 KRAS 3845
Two-hybrid Homo sapiens
181 HNRNPU 3192
Affinity Capture-MS Homo sapiens
182 ARHGAP24  
Affinity Capture-MS Homo sapiens
183 RC3H1 149041
Affinity Capture-MS Homo sapiens
184 ARHGEF10L 55160
Affinity Capture-MS Homo sapiens
185 LUC7L 55692
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
186 HIST1H2AE 3012
Affinity Capture-MS Homo sapiens
187 FBXL6  
Affinity Capture-MS Homo sapiens
188 EP300 2033
Affinity Capture-MS Homo sapiens
View the network image/svg+xml
 Pathways in which DDX50 is involved
No pathways found





Perform bioinformatics analysis of your extracellular vesicle data set using FunRich, a open access standalone tool. NEW UPDATED VERSION OF FunRich available for download (12/09/2016) from here