Gene ontology annotations for ROCK1
Experiment description of studies that identified ROCK1 in exosomes
1
Experiment ID
489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 6
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
2
Experiment ID
490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 7
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
3
Experiment ID
491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 8
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
4
Experiment ID
492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 9
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
5
Experiment ID
226
MISEV standards
✔
EM
Biophysical techniques
✔
GAPDH|CD9|FLOT1
Enriched markers
✔
LMNA|H2AFX|ATP5A1|TOMM20
Negative markers
✘
Particle analysis
Identified molecule
mRNA
Identification method
Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
PubMed ID
26027894
Organism
Homo sapiens
Experiment description
"Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting"
Authors
"Bas W. M. van Balkom, Almut S. Eisele, D. Michiel Pegtel, Sander Bervoets, Marianne C. Verhaar"
Journal name
Journal of Extracellular Vesicles
Publication year
2015
Sample
Endothelial cells
Sample name
HMEC-1
Isolation/purification methods
Differential ultracentrifugation Sucrose density gradient
Flotation density
1.10 g/mL
Molecules identified in the study
miRNA Protein snoRNA lncRNA yRNA snRNA mRNA ncRNA mtRNA vtRNA scaRNA lincRNA
Methods used in the study
Small RNA sequencing (Illumina HiSeq 2000 (Solexa) Western blotting
6
Experiment ID
363
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
7
Experiment ID
364
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
8
Experiment ID
365
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
9
Experiment ID
488
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Homo sapiens
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Mesenchymal stem cells
Sample name
UCMSC
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
10
Experiment ID
231
MISEV standards
✘
Biophysical techniques
✔
Alix|CD63|CD9
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
25332113
Organism
Homo sapiens
Experiment description
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name
Transfusion
Publication year
2015
Sample
Platelets
Sample name
PL-Exs - Rep 1
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient
Flotation density
1.12-1.15 g/mL
Molecules identified in the study
Protein Lipids
Methods used in the study
Western blotting Mass spectrometry
11
Experiment ID
232
MISEV standards
✘
Biophysical techniques
✘
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
25332113
Organism
Homo sapiens
Experiment description
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name
Transfusion
Publication year
2015
Sample
Platelets
Sample name
PL-Exs - Rep 2
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient
Flotation density
1.12-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
12
Experiment ID
233
MISEV standards
✘
Biophysical techniques
✘
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
25332113
Organism
Homo sapiens
Experiment description
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name
Transfusion
Publication year
2015
Sample
Platelets
Sample name
PL-Exs - Rep 3
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient
Flotation density
1.12-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
13
Experiment ID
834
MISEV standards
✔
EM
Biophysical techniques
✔
LAMP2|CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35333565
Organism
Homo sapiens
Experiment description
LAMP2A regulates the loading of proteins into exosomes
Authors
"Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name
Sci Adv
Publication year
2022
Sample
Retinal pigment epithelial cells
Sample name
ARPE-19
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
14
Experiment ID
835
MISEV standards
✔
EM
Biophysical techniques
✔
CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35333565
Organism
Homo sapiens
Experiment description
LAMP2A regulates the loading of proteins into exosomes
Authors
"Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name
Sci Adv
Publication year
2022
Sample
Retinal pigment epithelial cells
Sample name
ARPE-19
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
15
Experiment ID
217
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|CD81|CD9|CD63
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23844026
Organism
Homo sapiens
Experiment description
Characterization of human thymic exosomes.
Authors
"Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O."
Journal name
PLoS One
Publication year
2013
Sample
Thymus
Sample name
Normal-Thymus
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
Protein-protein interactions for ROCK1
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
UBE2H
7328
Affinity Capture-MS
Homo sapiens
2
SPRTN
Affinity Capture-MS
Homo sapiens
3
HDAC2
3066
Affinity Capture-MS
Homo sapiens
4
MED17
Affinity Capture-MS
Homo sapiens
5
LAMP3
Proximity Label-MS
Homo sapiens
6
SYCE1
Affinity Capture-MS
Homo sapiens
7
YWHAE
7531
Affinity Capture-MS
Homo sapiens
8
TSG101
7251
Two-hybrid
Homo sapiens
Affinity Capture-Western
Homo sapiens
9
FAM21A
387680
Co-fractionation
Homo sapiens
10
LAMP2
3920
Proximity Label-MS
Homo sapiens
11
CFL1
1072
Affinity Capture-Western
Homo sapiens
12
LMO2
Two-hybrid
Homo sapiens
13
MLLT4
4301
Proximity Label-MS
Homo sapiens
14
MON2
23041
Co-fractionation
Homo sapiens
15
CASP3
836
Biochemical Activity
Homo sapiens
16
ANKRD49
Affinity Capture-MS
Homo sapiens
17
IMPDH2
3615
Proximity Label-MS
Homo sapiens
18
HGS
9146
Co-localization
Homo sapiens
19
LINC00452
Protein-RNA
Homo sapiens
Affinity Capture-RNA
Homo sapiens
20
ADD1
118
Co-fractionation
Homo sapiens
21
RHOA
387
Reconstituted Complex
Homo sapiens
Two-hybrid
Homo sapiens
Affinity Capture-Western
Homo sapiens
Two-hybrid
Homo sapiens
Affinity Capture-Western
Homo sapiens
Reconstituted Complex
Homo sapiens
Far Western
Homo sapiens
22
PFN2
5217
Affinity Capture-Western
Homo sapiens
Affinity Capture-Western
Homo sapiens
23
SMAD5
4090
Biochemical Activity
Homo sapiens
24
RAB35
11021
Proximity Label-MS
Homo sapiens
25
ANAPC16
Affinity Capture-MS
Homo sapiens
26
TRIM15
PCA
Homo sapiens
27
NEIL3
Affinity Capture-MS
Homo sapiens
28
LAMTOR1
55004
Proximity Label-MS
Homo sapiens
29
Snap29
Affinity Capture-MS
Mus musculus
30
UBE2T
Biochemical Activity
Homo sapiens
31
TPPP
11076
Biochemical Activity
Homo sapiens
32
LYN
4067
Proximity Label-MS
Homo sapiens
33
MCAM
4162
Proximity Label-MS
Homo sapiens
34
RAB4A
5867
Proximity Label-MS
Homo sapiens
35
CERS2
29956
Affinity Capture-MS
Homo sapiens
36
ADD2
119
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
37
CDH1
999
Co-fractionation
Homo sapiens
38
FAM124A
Two-hybrid
Homo sapiens
39
BBS1
582
Affinity Capture-MS
Homo sapiens
40
NTRK1
4914
Affinity Capture-MS
Homo sapiens
41
DCAF7
10238
Affinity Capture-MS
Homo sapiens
42
SLC9A1
6548
Affinity Capture-Western
Homo sapiens
43
CDKN3
1033
Affinity Capture-Western
Homo sapiens
44
IL20RA
Affinity Capture-MS
Homo sapiens
45
SMAD2
4087
Two-hybrid
Homo sapiens
46
KIAA1033
23325
Co-fractionation
Homo sapiens
47
CYLD
Affinity Capture-MS
Homo sapiens
48
C6orf165
Two-hybrid
Homo sapiens
49
HMGB2
3148
Two-hybrid
Homo sapiens
50
ANLN
54443
Affinity Capture-MS
Homo sapiens
51
RNF40
9810
Co-fractionation
Homo sapiens
52
ZBTB2
57621
Affinity Capture-MS
Homo sapiens
53
KDM4D
Affinity Capture-MS
Homo sapiens
54
CHERP
10523
Affinity Capture-MS
Homo sapiens
55
LAMP1
3916
Proximity Label-MS
Homo sapiens
56
MAGEB4
Two-hybrid
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
57
Smad3
Affinity Capture-MS
Mus musculus
58
CUL3
8452
Affinity Capture-MS
Homo sapiens
59
ROCK2
9475
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Co-fractionation
Homo sapiens
Cross-Linking-MS (XL-MS)
Homo sapiens
60
ELAC2
60528
Cross-Linking-MS (XL-MS)
Homo sapiens
61
ARF6
382
Proximity Label-MS
Homo sapiens
62
HNRNPA1
3178
Affinity Capture-MS
Homo sapiens
63
SNX27
81609
Affinity Capture-MS
Homo sapiens
64
HTRA3
94031
Affinity Capture-MS
Homo sapiens
65
SEC24A
10802
Co-fractionation
Homo sapiens
66
NXF1
10482
Affinity Capture-RNA
Homo sapiens
67
RND3
390
Reconstituted Complex
Homo sapiens
68
ANKFY1
51479
Co-fractionation
Homo sapiens
69
AHR
196
Affinity Capture-MS
Homo sapiens
70
RHOBTB1
Affinity Capture-Western
Homo sapiens
Co-localization
Homo sapiens
71
TNS2
23371
Affinity Capture-MS
Homo sapiens
72
NDC80
10403
Co-fractionation
Homo sapiens
73
RHOB
388
Proximity Label-MS
Homo sapiens
Reconstituted Complex
Homo sapiens
74
ATP6V0A1
535
Affinity Capture-MS
Homo sapiens
75
LMNA
4000
Co-fractionation
Homo sapiens
76
TAF4
6874
Affinity Capture-MS
Homo sapiens
77
FLOT1
10211
Proximity Label-MS
Homo sapiens
78
XRCC5
7520
Affinity Capture-MS
Homo sapiens
79
CDC25A
Biochemical Activity
Homo sapiens
80
PLEKHA4
57664
Affinity Capture-MS
Homo sapiens
81
GAB1
Co-crystal Structure
Homo sapiens
82
PARP1
142
Proximity Label-MS
Homo sapiens
83
HEXA
3073
Co-fractionation
Homo sapiens
84
CASP7
Biochemical Activity
Homo sapiens
85
TP53
7157
Affinity Capture-MS
Homo sapiens
86
RHOC
389
Affinity Capture-Western
Homo sapiens
87
Dync1li1
235661
Affinity Capture-MS
Mus musculus
88
LONP1
9361
Co-fractionation
Homo sapiens
89
DFFA
1676
Co-fractionation
Homo sapiens
90
EDEM1
Affinity Capture-MS
Homo sapiens
91
SMURF1
57154
Affinity Capture-MS
Homo sapiens
92
CDK15
Affinity Capture-MS
Homo sapiens
93
SMAD4
Affinity Capture-MS
Homo sapiens
94
LIMK2
3985
Biochemical Activity
Homo sapiens
95
UFL1
23376
Affinity Capture-MS
Homo sapiens
96
PHKA2
5256
Affinity Capture-MS
Homo sapiens
97
ASMTL
8623
Co-fractionation
Homo sapiens
98
ITSN2
50618
Two-hybrid
Homo sapiens
99
POLR3C
10623
Two-hybrid
Homo sapiens
100
RAB2A
5862
Proximity Label-MS
Homo sapiens
101
ARRB1
408
Affinity Capture-MS
Homo sapiens
102
FECH
2235
Affinity Capture-MS
Homo sapiens
103
EPHA2
1969
Proximity Label-MS
Homo sapiens
104
KRAS
3845
Proximity Label-MS
Homo sapiens
105
NFIC
4782
Co-fractionation
Homo sapiens
106
DIAPH1
1729
Co-fractionation
Homo sapiens
107
IKBKB
3551
Biochemical Activity
Homo sapiens
108
PRMT1
3276
Affinity Capture-MS
Homo sapiens
109
NOTCH1
4851
Affinity Capture-MS
Homo sapiens
110
CUL4A
8451
Affinity Capture-MS
Homo sapiens
111
EP300
2033
Affinity Capture-MS
Homo sapiens
View the network
image/svg+xml
Pathways in which ROCK1 is involved