Gene description for CDH1
Gene name cadherin 1, type 1, E-cadherin (epithelial)
Gene symbol CDH1
Other names/aliases Arc-1
CD324
CDHE
ECAD
LCAM
UVO
Species Homo sapiens
 Database cross references - CDH1
ExoCarta ExoCarta_999
Entrez Gene 999
HGNC 1748
MIM 192090
UniProt P12830  
 CDH1 identified in exosomes derived from the following tissue/cell type
Colorectal cancer cells 17956143    
Colorectal cancer cells 23161513    
Colorectal cancer cells 23161513    
Colorectal cancer cells 23161513    
Colorectal cancer cells 25890246    
Colorectal cancer cells 25890246    
Keratinocytes 19530224    
Keratinocytes 19530224    
Ovarian cancer cells 23333927    
Ovarian cancer cells 23333927    
Prostate cancer cells 25844599    
 Gene ontology annotations for CDH1
Molecular Function
    protein phosphatase binding GO:0019903 IEA
    protein binding GO:0005515 IPI
    gamma-catenin binding GO:0045295 IPI
    GTPase activating protein binding GO:0032794 IPI
    ankyrin binding GO:0030506 IPI
    protein domain specific binding GO:0019904 IEA
    glycoprotein binding GO:0001948 IPI
    cell adhesion molecule binding GO:0050839 NAS
    calcium ion binding GO:0005509 IEA
    beta-catenin binding GO:0008013 IDA
Biological Process
    cellular response to indole-3-methanol GO:0071681 IDA
    positive regulation of transcription, DNA-templated GO:0045893 IDA
    single organismal cell-cell adhesion GO:0016337 IDA
    regulation of protein localization to cell surface GO:2000008 IEA
    homophilic cell adhesion via plasma membrane adhesion molecules GO:0007156 NAS
    extracellular matrix organization GO:0030198 TAS
    negative regulation of cell-cell adhesion GO:0022408 IMP
    small GTPase mediated signal transduction GO:0007264 TAS
    sensory perception of sound GO:0007605 IEA
    pituitary gland development GO:0021983 IEA
    cellular response to lithium ion GO:0071285 IDA
    regulation of branching involved in salivary gland morphogenesis GO:0060693 IEA
    adherens junction organization GO:0034332 TAS
    positive regulation of transcription factor import into nucleus GO:0042993 IDA
    negative regulation of epithelial cell proliferation GO:0050680 IEA
    cochlea development GO:0090102 IEA
    trophectodermal cell differentiation GO:0001829 IEA
    bicellular tight junction assembly GO:0070830 IEA
    establishment of protein localization to plasma membrane GO:0090002 IMP
    apoptotic process GO:0006915 TAS
    synapse assembly GO:0007416 IEA
    protein homooligomerization GO:0051260 IEA
    neuron projection development GO:0031175 IEA
    salivary gland cavitation GO:0060662 IEA
    cell junction assembly GO:0034329 TAS
    calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules GO:0016339 IEA
    protein metabolic process GO:0019538 IEA
    regulation of water loss via skin GO:0033561 IEA
    regulation of neuron migration GO:2001222 IEA
    protein localization to plasma membrane GO:0072659 IDA
    response to drug GO:0042493 IEA
    regulation of immune response GO:0050776 TAS
    extracellular matrix disassembly GO:0022617 TAS
    intestinal epithelial cell development GO:0060576 IEA
    cellular component disassembly involved in execution phase of apoptosis GO:0006921 TAS
    epithelial cell morphogenesis GO:0003382 IEA
    response to toxic substance GO:0009636 IEA
    programmed cell death GO:0012501 TAS
    cellular response to amino acid stimulus GO:0071230 IEA
    regulation of cysteine-type endopeptidase activity involved in apoptotic process GO:0043281 IEA
    cell-cell junction organization GO:0045216 TAS
    negative regulation of canonical Wnt signaling pathway GO:0090090 IEA
Subcellular Localization
    cell junction GO:0030054 TAS
    lateral plasma membrane GO:0016328 IDA
    lamellipodium GO:0030027 IDA
    cytoplasmic side of plasma membrane GO:0009898 IDA
    flotillin complex GO:0016600 IDA
    cell surface GO:0009986 IEA
    Schmidt-Lanterman incisure GO:0043220 IEA
    extracellular exosome GO:0070062 IDA
    trans-Golgi network GO:0005802 IMP
    aggresome GO:0016235 IDA
    focal adhesion GO:0005925 IDA
    axon terminus GO:0043679 IEA
    integral component of membrane GO:0016021 IDA
    cortical actin cytoskeleton GO:0030864 IDA
    cell-cell adherens junction GO:0005913 IDA
    lateral loop GO:0043219 IEA
    actin cytoskeleton GO:0015629 IDA
    perinuclear region of cytoplasm GO:0048471 IDA
    apical junction complex GO:0043296 IDA
    node of Ranvier GO:0033268 IEA
    extracellular region GO:0005576 TAS
    plasma membrane GO:0005886 TAS
    basolateral plasma membrane GO:0016323 IEA
    apical part of cell GO:0045177 IEA
    cytoplasm GO:0005737 IDA
    catenin complex GO:0016342 IDA
    endosome GO:0005768 IEA
 Experiment description of studies that identified CDH1 in exosomes
1
Experiment ID 20
ISEV standards
EM
EV Biophysical techniques
HSP90
EV Cytosolic markers
CD63|CD81|LAMP1
EV Membrane markers
GOLGA2|cytochrome c
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 17956143    
Organism Homo sapiens
Experiment description Proteomic analysis of microvesicles derived from human colorectal cancer cells.
Authors Choi DS, Lee JM, Park GW, Lim HW, Bang JY, Kim YK, Kwon KH, Kwon HJ, Kim KP, Gho YS
Journal name JPR
Publication year 2007
Sample Colorectal cancer cells
Sample name HT29
Isolation/purification methods Differential centrifugation
Sucrose density gradient
Diafiltration
Flotation density 1.16 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [LTQ]
Western blotting
2
Experiment ID 207
ISEV standards
EM
EV Biophysical techniques
TSG101|HSP70
EV Cytosolic markers
FLOT1
EV Membrane markers
VDAC
EV Negative markers
NTA
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23161513    
Organism Homo sapiens
Experiment description Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ.
Journal name Mol Cell Proteomics
Publication year 2012
Sample Colorectal cancer cells
Sample name DKO-1
Isolation/purification methods Differential centrifugation
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
3
Experiment ID 208
ISEV standards
EM
EV Biophysical techniques
TSG101|HSP70
EV Cytosolic markers
FLOT1
EV Membrane markers
VDAC
EV Negative markers
NTA
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23161513    
Organism Homo sapiens
Experiment description Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ.
Journal name Mol Cell Proteomics
Publication year 2012
Sample Colorectal cancer cells
Sample name Dks-8
Isolation/purification methods Differential centrifugation
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
4
Experiment ID 209
ISEV standards
EV Biophysical techniques
TSG101|HSP70
EV Cytosolic markers
FLOT1
EV Membrane markers
VDAC
EV Negative markers
NTA
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23161513    
Organism Homo sapiens
Experiment description Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ.
Journal name Mol Cell Proteomics
Publication year 2012
Sample Colorectal cancer cells
Sample name DLD-1
Isolation/purification methods Differential centrifugation
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
5
Experiment ID 282
ISEV standards
CEM
EV Biophysical techniques
Alix|TSG101
EV Cytosolic markers
CD63|CD81|EpCAM
EV Membrane markers
EV Negative markers
DLS
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25890246    
Organism Homo sapiens
Experiment description Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct.
Authors Xu R, Greening DW, Rai A, Ji H, Simpson RJ.
Journal name Methods
Publication year 2015
Sample Colorectal cancer cells
Sample name LIM1863 - Ultracentrifugation - Rep 1
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Centrifugal concentration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Western blotting
6
Experiment ID 283
ISEV standards
CEM
EV Biophysical techniques
Alix|TSG101
EV Cytosolic markers
CD63|CD81|EpCAM
EV Membrane markers
EV Negative markers
DLS
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25890246    
Organism Homo sapiens
Experiment description Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct.
Authors Xu R, Greening DW, Rai A, Ji H, Simpson RJ.
Journal name Methods
Publication year 2015
Sample Colorectal cancer cells
Sample name LIM1863 - Ultracentrifugation - Rep 2
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Centrifugal concentration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Western blotting
7
Experiment ID 189
ISEV standards
EM
EV Biophysical techniques
EV Cytosolic markers
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 19530224    
Organism Homo sapiens
Experiment description Profile of exosomes related proteins released by differentiated and undifferentiated human keratinocytes.
Authors Chavez-Muñoz C, Kilani RT, Ghahary A.
Journal name J Cell Physiol
Publication year 2009
Sample Keratinocytes
Sample name Keratinocytes - Differentiated
Isolation/purification methods Differential centrifugation
Filtration
Sucrose cushion
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
8
Experiment ID 190
ISEV standards
EM
EV Biophysical techniques
HSC70
EV Cytosolic markers
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 19530224    
Organism Homo sapiens
Experiment description Profile of exosomes related proteins released by differentiated and undifferentiated human keratinocytes.
Authors Chavez-Muñoz C, Kilani RT, Ghahary A.
Journal name J Cell Physiol
Publication year 2009
Sample Keratinocytes
Sample name Keratinocytes - Undifferentiated
Isolation/purification methods Differential centrifugation
Filtration
Sucrose cushion
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
9
Experiment ID 211
ISEV standards
EM
EV Biophysical techniques
TSG101|Alix
EV Cytosolic markers
EpCAM|TFRC
EV Membrane markers
cytochrome c|GOLGA2
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23333927    
Organism Homo sapiens
Experiment description Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K.
Journal name J Proteomics
Publication year 2013
Sample Ovarian cancer cells
Sample name IGROV1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.09-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
10
Experiment ID 212
ISEV standards
CEM
EV Biophysical techniques
TSG101|Alix
EV Cytosolic markers
EpCAM|TFRC
EV Membrane markers
Cytochrome C|GOLGA2
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23333927    
Organism Homo sapiens
Experiment description Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K.
Journal name J Proteomics
Publication year 2013
Sample Ovarian cancer cells
Sample name OVCAR-3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.09-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
11
Experiment ID 275
ISEV standards
EM
EV Biophysical techniques
TSG101|Alix|RAB5A
EV Cytosolic markers
CD9|CD82|CD63|CD81
EV Membrane markers
AIF
EV Negative markers
NTA
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25844599    
Organism Homo sapiens
Experiment description Molecular profiling of prostate cancer derived exosomes may reveal a predictive signature for response to docetaxel.
Authors Kharaziha P, Chioureas D, Rutishauser D, Baltatzis G, Lennartsson L, Fonseca P, Azimi A, Hultenby K, Zubarev R, Ullen A, Yachnin J, Nilsson S, Panaretakis T.
Journal name Oncotarget
Publication year 2015
Sample Prostate cancer cells
Sample name DU145 - Docetaxel sensitive
Isolation/purification methods Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.12-1.19 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry/Flow cytometry/Western blotting
 Protein-protein interactions for CDH1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 CA9 768
Affinity Capture-Western Homo sapiens
2 CSE1L 1434
Invivo Homo sapiens
Affinity Capture-Western Homo sapiens
3 PTPRF 5792
Invivo Homo sapiens
4 RAB8B 51762
Affinity Capture-Western Homo sapiens
5 ACTN1 87
Affinity Capture-Western Homo sapiens
6 GNA12 2768
Reconstituted Complex Homo sapiens
7 HDAC2 3066
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
8 CDC26  
Reconstituted Complex Homo sapiens
9 JUP 3728
Invivo Homo sapiens
Invitro Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
10 CASP8  
Invivo Homo sapiens
11 VEZATIN  
Affinity Capture-Western Homo sapiens
12 PSEN1  
Affinity Capture-Western Homo sapiens
13 CBLL1  
Two-hybrid Homo sapiens
14 ERBB2IP 55914
Invitro Homo sapiens
Invivo Homo sapiens
15 APC2  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
16 NEDD9 4739
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
17 CTNNB1 1499
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Invitro Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
18 EZR 7430
Invivo Homo sapiens
19 DLG1 1739
Invitro Homo sapiens
20 ARPC2 10109
Affinity Capture-Western Homo sapiens
21 MYO7A 4647
Affinity Capture-Western Homo sapiens
22 CDH3 1001
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Co-purification Homo sapiens
23 CDC23 8697
Reconstituted Complex Homo sapiens
24 IRS1 3667
Invivo Homo sapiens
25 ANAPC1 64682
Reconstituted Complex Homo sapiens
26 HDAC1 3065
Affinity Capture-Western Homo sapiens
Co-purification Homo sapiens
27 BOC  
Affinity Capture-Western Homo sapiens
28 PKD1 5310
Invivo Homo sapiens
Invitro Homo sapiens
29 ANAPC7 51434
Reconstituted Complex Homo sapiens
30 YES1 7525
Reconstituted Complex Homo sapiens
31 CDON  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
32 ACTG1 71
Affinity Capture-Western Homo sapiens
33 ANAPC4  
Reconstituted Complex Homo sapiens
34 CDC16 8881
Reconstituted Complex Homo sapiens
35 CDH1 999
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
36 FYN 2534
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
37 SHREW1  
Affinity Capture-Western Homo sapiens
38 PKP4 8502
Two-hybrid Homo sapiens
39 EGFR 1956
Affinity Capture-Western Homo sapiens
40 FER  
Reconstituted Complex Homo sapiens
41 MET 4233
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
42 IQGAP1 8826
Invivo Homo sapiens
Invitro Homo sapiens
43 GNA13 10672
Reconstituted Complex Homo sapiens
44 SRC 6714
Affinity Capture-Western Homo sapiens
45 CTNNA1 1495
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
46 VCL 7414
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
47 MAD2L2 10459
Reconstituted Complex Homo sapiens
48 MAGI1  
Affinity Capture-Western Homo sapiens
49 ANAPC11  
Reconstituted Complex Homo sapiens
50 ITGAE  
Co-purification Homo sapiens
51 CTNND1 1500
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Invivo Homo sapiens
Invivo Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
52 CDC27 996
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
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