Gene description for NUBP2
Gene name nucleotide binding protein 2
Gene symbol NUBP2
Other names/aliases CFD1
NBP 2
NUBP1
Species Homo sapiens
 Database cross references - NUBP2
ExoCarta ExoCarta_10101
Vesiclepedia VP_10101
Entrez Gene 10101
HGNC 8042
MIM 610779
UniProt Q9Y5Y2  
 NUBP2 identified in exosomes derived from the following tissue/cell type
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Mesenchymal stem cells 36408942    
Thymus 23844026    
 Gene ontology annotations for NUBP2
Molecular Function
    nucleotide binding GO:0000166 TAS
    protein binding GO:0005515 IPI
    ATP binding GO:0005524 IEA
    metal ion binding GO:0046872 IEA
    iron-sulfur cluster binding GO:0051536 IBA
    4 iron, 4 sulfur cluster binding GO:0051539 IEA
    ATP-dependent FeS chaperone activity GO:0140663 IEA
Biological Process
    iron-sulfur cluster assembly GO:0016226 IBA
    cell projection organization GO:0030030 IEA
Subcellular Localization
    nucleus GO:0005634 IEA
    centriole GO:0005814 IEA
    cytosol GO:0005829 IBA
    cilium GO:0005929 IEA
    spindle pole centrosome GO:0031616 IEA
 Experiment description of studies that identified NUBP2 in exosomes
1
Experiment ID 489
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 6
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 490
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
3
Experiment ID 491
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
4
Experiment ID 492
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 9
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
5
Experiment ID 488
MISEV standards
EM
Biophysical techniques
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
CANX
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Homo sapiens
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Mesenchymal stem cells
Sample name UCMSC
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
6
Experiment ID 217
MISEV standards
EM
Biophysical techniques
TSG101|CD81|CD9|CD63
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23844026    
Organism Homo sapiens
Experiment description Characterization of human thymic exosomes.
Authors "Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O."
Journal name PLoS One
Publication year 2013
Sample Thymus
Sample name Normal-Thymus
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for NUBP2
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 UBE2H 7328
Affinity Capture-MS Homo sapiens
2 RIT1 6016
Negative Genetic Homo sapiens
3 ARL8A 127829
Affinity Capture-MS Homo sapiens
4 RNASEH2B  
Affinity Capture-MS Homo sapiens
5 PTMS 5763
Co-fractionation Homo sapiens
6 COIL  
Proximity Label-MS Homo sapiens
7 PSMD6 9861
Co-fractionation Homo sapiens
8 PTMA 5757
Co-fractionation Homo sapiens
9 GALNT1 2589
Affinity Capture-MS Homo sapiens
10 GAB1  
Affinity Capture-MS Homo sapiens
11 TARDBP 23435
Co-fractionation Homo sapiens
12 BTF3 689
Affinity Capture-MS Homo sapiens
13 HIST1H2BG 8339
Proximity Label-MS Homo sapiens
14 PISD  
Affinity Capture-MS Homo sapiens
15 TSEN2  
Affinity Capture-MS Homo sapiens
16 C9orf78 51759
Co-fractionation Homo sapiens
17 USP9X 8239
Co-fractionation Homo sapiens
18 CBWD2  
Affinity Capture-MS Homo sapiens
19 CNP 1267
Affinity Capture-MS Homo sapiens
20 LAMP2 3920
Proximity Label-MS Homo sapiens
21 PSMD4 5710
Co-fractionation Homo sapiens
22 SRSF2 6427
Co-fractionation Homo sapiens
23 SOX2  
Affinity Capture-MS Homo sapiens
24 POTEF 728378
Affinity Capture-MS Homo sapiens
25 APEX1 328
Affinity Capture-RNA Homo sapiens
26 GGT7 2686
Affinity Capture-MS Homo sapiens
27 KIF23 9493
Affinity Capture-MS Homo sapiens
28 CIAPIN1 57019
Affinity Capture-MS Homo sapiens
29 H2AFV 94239
Co-fractionation Homo sapiens
30 HERC4 26091
Co-fractionation Homo sapiens
31 STK11IP 114790
Affinity Capture-MS Homo sapiens
32 RECQL4  
Affinity Capture-MS Homo sapiens
33 RHOA 387
Co-fractionation Homo sapiens
34 FANCI 55215
Affinity Capture-MS Homo sapiens
35 NFXL1 152518
Affinity Capture-MS Homo sapiens
36 CPLX1 10815
Co-fractionation Homo sapiens
37 RHOT1 55288
Affinity Capture-MS Homo sapiens
38 KRTAP10-7  
Two-hybrid Homo sapiens
39 PFDN6 10471
Co-fractionation Homo sapiens
40 STAT6 6778
Co-fractionation Homo sapiens
41 MAD2L1 4085
Affinity Capture-MS Homo sapiens
42 PABPC4 8761
Co-fractionation Homo sapiens
43 FAS 355
Affinity Capture-MS Homo sapiens
44 DDX19B 11269
Affinity Capture-MS Homo sapiens
45 APOO 79135
Proximity Label-MS Homo sapiens
46 RAD23B 5887
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
47 LLGL1 3996
Affinity Capture-MS Homo sapiens
48 IRAK1  
Affinity Capture-MS Homo sapiens
49 CTDP1 9150
Affinity Capture-MS Homo sapiens
50 NARFL 64428
Affinity Capture-MS Homo sapiens
51 CDK5 1020
Co-fractionation Homo sapiens
52 PSME1 5720
Co-fractionation Homo sapiens
53 TUBA1A 7846
Affinity Capture-MS Homo sapiens
54 PRKAG1 5571
Affinity Capture-MS Homo sapiens
55 TUFM 7284
Co-fractionation Homo sapiens
56 CHMP4B 128866
Affinity Capture-MS Homo sapiens
57 NUDC 10726
Co-fractionation Homo sapiens
58 TK2  
Affinity Capture-MS Homo sapiens
59 DCP1A 55802
Affinity Capture-MS Homo sapiens
60 B3GALNT2 148789
Affinity Capture-MS Homo sapiens
61 PPP2CA 5515
Co-fractionation Homo sapiens
62 NME3 4832
Affinity Capture-MS Homo sapiens
63 RPN1 6184
Proximity Label-MS Homo sapiens
64 DTWD1  
Affinity Capture-MS Homo sapiens
65 KIAA0226  
Affinity Capture-MS Homo sapiens
66 PPP1R14B 26472
Co-fractionation Homo sapiens
67 YAP1 10413
Co-fractionation Homo sapiens
68 ACSL4 2182
Affinity Capture-MS Homo sapiens
69 EIF2B4 8890
Affinity Capture-MS Homo sapiens
70 PIPSL 266971
Co-fractionation Homo sapiens
71 IGBP1 3476
Co-fractionation Homo sapiens
72 BAG3 9531
Affinity Capture-MS Homo sapiens
Affinity Capture-Luminescence Homo sapiens
73 NOTCH2NL 388677
Two-hybrid Homo sapiens
74 RBBP6 5930
Co-fractionation Homo sapiens
75 CD58 965
Affinity Capture-MS Homo sapiens
76 PPP4R2  
Co-fractionation Homo sapiens
77 MADD 8567
Affinity Capture-MS Homo sapiens
78 NR3C1 2908
Proximity Label-MS Homo sapiens
79 UBXN7 26043
Co-fractionation Homo sapiens
80 SLC27A4 10999
Affinity Capture-MS Homo sapiens
81 PRKAA2 5563
Affinity Capture-MS Homo sapiens
82 SETX  
Affinity Capture-MS Homo sapiens
83 QPCT 25797
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
84 CUL3 8452
Affinity Capture-MS Homo sapiens
85 UBR7  
Co-fractionation Homo sapiens
86 EGFR 1956
Affinity Capture-MS Homo sapiens
87 KRTAP10-3  
Two-hybrid Homo sapiens
88 TTF2 8458
Affinity Capture-MS Homo sapiens
89 UBE2R2 54926
Co-fractionation Homo sapiens
90 FBXL12 54850
Affinity Capture-MS Homo sapiens
91 ALDH3B1 221
Affinity Capture-MS Homo sapiens
92 VBP1 7411
Co-fractionation Homo sapiens
93 HEXA 3073
Co-fractionation Homo sapiens
94 UVRAG  
Affinity Capture-MS Homo sapiens
95 AURKB 9212
Affinity Capture-MS Homo sapiens
96 MICB  
Affinity Capture-MS Homo sapiens
97 IL12RB1  
Affinity Capture-MS Homo sapiens
98 TNS2 23371
Two-hybrid Homo sapiens
99 NUBP1 4682
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
100 ARID1A 8289
Negative Genetic Homo sapiens
101 KRAS 3845
Synthetic Lethality Homo sapiens
Negative Genetic Homo sapiens
102 THADA 63892
Co-fractionation Homo sapiens
103 CBWD1 55871
Affinity Capture-MS Homo sapiens
104 GNPDA1 10007
Co-fractionation Homo sapiens
105 AKAP1 8165
Proximity Label-MS Homo sapiens
106 ELP2 55250
Affinity Capture-MS Homo sapiens
107 PAIP1 10605
Co-fractionation Homo sapiens
108 STUB1 10273
Co-fractionation Homo sapiens
109 SHKBP1  
Affinity Capture-MS Homo sapiens
110 PLEKHA4 57664
Affinity Capture-MS Homo sapiens
111 SEC24A 10802
Co-fractionation Homo sapiens
112 ZRANB2 9406
Co-fractionation Homo sapiens
113 RIC8B 55188
Affinity Capture-MS Homo sapiens
114 PEX19 5824
Co-fractionation Homo sapiens
115 EPHA4 2043
Affinity Capture-MS Homo sapiens
116 MISP 126353
Affinity Capture-MS Homo sapiens
117 PFDN1 5201
Co-fractionation Homo sapiens
118 RNASEH2C 84153
Affinity Capture-MS Homo sapiens
119 FKBP9 11328
Co-fractionation Homo sapiens
120 PIK3R4 30849
Affinity Capture-MS Homo sapiens
121 S100A9 6280
Co-fractionation Homo sapiens
122 DDX58 23586
Affinity Capture-RNA Homo sapiens
123 RNASEH2A 10535
Affinity Capture-MS Homo sapiens
124 LPCAT2 54947
Affinity Capture-MS Homo sapiens
125 SMYD2 56950
Affinity Capture-MS Homo sapiens
126 TAF6L 10629
Affinity Capture-MS Homo sapiens
127 SERBP1 26135
Affinity Capture-MS Homo sapiens
128 HSPA4L 22824
Co-fractionation Homo sapiens
129 C9orf72  
Affinity Capture-MS Homo sapiens
130 AR 367
Affinity Capture-MS Homo sapiens
131 MOCS3 27304
Affinity Capture-MS Homo sapiens
132 UCK1  
Co-fractionation Homo sapiens
133 UBA6 55236
Co-fractionation Homo sapiens
134 PTGER4  
Two-hybrid Homo sapiens
135 FAM91A1 157769
Affinity Capture-MS Homo sapiens
136 ZNF146  
Affinity Capture-MS Homo sapiens
137 SCO2  
Affinity Capture-MS Homo sapiens
View the network image/svg+xml
 Pathways in which NUBP2 is involved
PathwayEvidenceSource
Cytosolic iron-sulfur cluster assembly IEA Reactome
Metabolism IEA Reactome





Perform bioinformatics analysis of your extracellular vesicle data set using FunRich, a open access standalone tool. NEW UPDATED VERSION OF FunRich available for download (12/09/2016) from here