Gene ontology annotations for BRK1
Experiment description of studies that identified BRK1 in exosomes
1
Experiment ID
80
MISEV standards
✘
Biophysical techniques
✔
CD81|MHCII
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
20458337
Organism
Homo sapiens
Experiment description
MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis -Sample 2
Authors
"Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M, Stoorvogel W."
Journal name
ICB
Publication year
2010
Sample
B cells
Sample name
RN (HLA-DR15)
Isolation/purification methods
Differential centrifugation Sucrose density gradient Immunobeads (MHC Class II)
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry [FT-ICR] Western blotting
2
Experiment ID
81
MISEV standards
✘
Biophysical techniques
✔
CD81|MHCII
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
20458337
Organism
Homo sapiens
Experiment description
MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis - Sample 3
Authors
"Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M, Stoorvogel W."
Journal name
ICB
Publication year
2010
Sample
B cells
Sample name
RN (HLA-DR15)
Isolation/purification methods
Differential centrifugation Sucrose density gradient Immunobeads (MHC Class II)
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry [FT-ICR] Western blotting
3
Experiment ID
489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 6
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
4
Experiment ID
490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 7
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
5
Experiment ID
491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 8
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
6
Experiment ID
492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 9
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
7
Experiment ID
363
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
8
Experiment ID
364
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
9
Experiment ID
365
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
10
Experiment ID
488
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Homo sapiens
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Mesenchymal stem cells
Sample name
UCMSC
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
11
Experiment ID
231
MISEV standards
✘
Biophysical techniques
✔
Alix|CD63|CD9
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
25332113
Organism
Homo sapiens
Experiment description
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name
Transfusion
Publication year
2015
Sample
Platelets
Sample name
PL-Exs - Rep 1
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient
Flotation density
1.12-1.15 g/mL
Molecules identified in the study
Protein Lipids
Methods used in the study
Western blotting Mass spectrometry
12
Experiment ID
232
MISEV standards
✘
Biophysical techniques
✘
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
25332113
Organism
Homo sapiens
Experiment description
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name
Transfusion
Publication year
2015
Sample
Platelets
Sample name
PL-Exs - Rep 2
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient
Flotation density
1.12-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
13
Experiment ID
233
MISEV standards
✘
Biophysical techniques
✘
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
25332113
Organism
Homo sapiens
Experiment description
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name
Transfusion
Publication year
2015
Sample
Platelets
Sample name
PL-Exs - Rep 3
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient
Flotation density
1.12-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
14
Experiment ID
217
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|CD81|CD9|CD63
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23844026
Organism
Homo sapiens
Experiment description
Characterization of human thymic exosomes.
Authors
"Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O."
Journal name
PLoS One
Publication year
2013
Sample
Thymus
Sample name
Normal-Thymus
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
Protein-protein interactions for BRK1
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
HOMER1
Affinity Capture-MS
Homo sapiens
2
TNIP1
10318
Affinity Capture-MS
Homo sapiens
3
CCSER2
54462
Affinity Capture-MS
Homo sapiens
4
KLC2
64837
Affinity Capture-MS
Homo sapiens
5
BLOC1S6
Affinity Capture-MS
Homo sapiens
6
CEP89
84902
Affinity Capture-MS
Homo sapiens
7
HSBP1
3281
Two-hybrid
Homo sapiens
Affinity Capture-MS
Homo sapiens
8
WASF2
10163
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
9
NUP62
23636
Affinity Capture-MS
Homo sapiens
10
DTNA
Affinity Capture-MS
Homo sapiens
11
ARL14EP
Affinity Capture-MS
Homo sapiens
12
SETDB1
Affinity Capture-MS
Homo sapiens
13
STX11
8676
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
14
SNAPIN
23557
Affinity Capture-MS
Homo sapiens
15
CCDC78
Affinity Capture-MS
Homo sapiens
16
BLOC1S1
Affinity Capture-MS
Homo sapiens
17
MBIP
Affinity Capture-MS
Homo sapiens
18
NDE1
54820
Affinity Capture-MS
Homo sapiens
19
NCKAP1L
3071
Affinity Capture-MS
Homo sapiens
20
PCNT
Affinity Capture-MS
Homo sapiens
21
PPFIA3
8541
Affinity Capture-MS
Homo sapiens
22
NAV1
89796
Affinity Capture-MS
Homo sapiens
23
KIF5B
3799
Affinity Capture-MS
Homo sapiens
24
CCDC53
51019
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
25
ABI1
10006
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
26
NHS
4810
Affinity Capture-MS
Homo sapiens
27
TIMM50
92609
Affinity Capture-MS
Homo sapiens
28
NCK1
4690
Affinity Capture-MS
Homo sapiens
29
WASF3
10810
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
30
EEA1
8411
Affinity Capture-MS
Homo sapiens
31
PFN1
5216
Affinity Capture-MS
Homo sapiens
32
PPFIA2
8499
Affinity Capture-MS
Homo sapiens
33
BANP
Affinity Capture-MS
Homo sapiens
34
SDK2
54549
Affinity Capture-MS
Homo sapiens
35
ARHGAP12
Affinity Capture-MS
Homo sapiens
36
CEP55
55165
Affinity Capture-MS
Homo sapiens
37
WASF1
8936
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
38
RB1CC1
9821
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
39
PLEKHH1
Affinity Capture-MS
Homo sapiens
40
GHRL
Affinity Capture-MS
Homo sapiens
41
KLC4
89953
Affinity Capture-MS
Homo sapiens
42
SNAP47
116841
Affinity Capture-MS
Homo sapiens
43
POC1A
Affinity Capture-MS
Homo sapiens
44
ACTA1
58
Co-fractionation
Homo sapiens
45
DTNBP1
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Two-hybrid
Homo sapiens
46
GCC2
9648
Affinity Capture-MS
Homo sapiens
47
BLOC1S5
63915
Affinity Capture-MS
Homo sapiens
48
KIF5A
3798
Affinity Capture-MS
Homo sapiens
49
ANKHD1
54882
Affinity Capture-MS
Homo sapiens
50
MIA3
375056
Affinity Capture-MS
Homo sapiens
51
ULK1
Affinity Capture-MS
Homo sapiens
52
BRAP
Two-hybrid
Homo sapiens
53
ACTG1
71
Co-fractionation
Homo sapiens
Affinity Capture-MS
Homo sapiens
54
SRCIN1
Affinity Capture-MS
Homo sapiens
55
DISC1
27185
Affinity Capture-MS
Homo sapiens
56
RNF40
9810
Affinity Capture-MS
Homo sapiens
57
CNGA4
Affinity Capture-MS
Homo sapiens
58
TSSC1
7260
Affinity Capture-MS
Homo sapiens
59
CYFIP2
26999
Affinity Capture-MS
Homo sapiens
60
MAD1L1
Affinity Capture-MS
Homo sapiens
61
GRIPAP1
56850
Affinity Capture-MS
Homo sapiens
62
NCKAP1
10787
Co-fractionation
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
63
AKAP9
10142
Affinity Capture-MS
Homo sapiens
64
ACTBL2
345651
Co-fractionation
Homo sapiens
65
NHSL1
Affinity Capture-MS
Homo sapiens
66
DIXDC1
Affinity Capture-MS
Homo sapiens
67
Wash
Affinity Capture-MS
Mus musculus
68
FARSB
10056
Affinity Capture-MS
Homo sapiens
69
COG6
57511
Affinity Capture-MS
Homo sapiens
70
EPS8L1
54869
Affinity Capture-MS
Homo sapiens
71
AMZ1
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
72
MRFAP1
Two-hybrid
Homo sapiens
73
LOH12CR1
118426
Affinity Capture-MS
Homo sapiens
74
UACA
55075
Affinity Capture-MS
Homo sapiens
75
PPFIA1
8500
Affinity Capture-MS
Homo sapiens
76
BAIAP2
10458
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
77
KIAA1522
57648
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
78
OST4
Affinity Capture-MS
Homo sapiens
79
CBLC
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
80
BLOC1S2
282991
Affinity Capture-MS
Homo sapiens
81
ANKHD1-EIF4EBP3
Affinity Capture-MS
Homo sapiens
82
ATG13
9776
Affinity Capture-MS
Homo sapiens
83
PFDN1
5201
Two-hybrid
Homo sapiens
84
ODF2L
Affinity Capture-MS
Homo sapiens
85
ATG101
Affinity Capture-MS
Homo sapiens
86
CENPF
1063
Affinity Capture-MS
Homo sapiens
87
RNF20
56254
Affinity Capture-MS
Homo sapiens
88
TBC1D2B
23102
Affinity Capture-MS
Homo sapiens
89
KIF5C
3800
Affinity Capture-MS
Homo sapiens
90
TRIP11
9321
Affinity Capture-MS
Homo sapiens
91
NCK2
8440
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
92
CEP44
Affinity Capture-MS
Homo sapiens
93
C10orf32
Affinity Capture-MS
Homo sapiens
94
UBB
7314
Affinity Capture-MS
Homo sapiens
95
SPG11
80208
Affinity Capture-MS
Homo sapiens
96
ABI2
10152
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
97
BLOC1S4
55330
Affinity Capture-MS
Homo sapiens
98
NDEL1
81565
Two-hybrid
Homo sapiens
Affinity Capture-MS
Homo sapiens
99
CYFIP1
23191
Affinity Capture-MS
Homo sapiens
100
NHSL2
Affinity Capture-MS
Homo sapiens
101
CCDC40
Affinity Capture-MS
Homo sapiens
102
BRI3BP
140707
Affinity Capture-MS
Homo sapiens
103
ARSF
416
Affinity Capture-MS
Homo sapiens
104
CDKN2A
1029
Co-fractionation
Homo sapiens
View the network
image/svg+xml
Pathways in which BRK1 is involved