Gene description for SMARCA1
Gene name SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Gene symbol SMARCA1
Other names/aliases ISWI
NURF140
SNF2L
SNF2L1
SNF2LB
SNF2LT
SWI
SWI2
Species Homo sapiens
 Database cross references - SMARCA1
ExoCarta ExoCarta_6594
Vesiclepedia VP_6594
Entrez Gene 6594
HGNC 11097
MIM 300012
UniProt P28370  
 SMARCA1 identified in exosomes derived from the following tissue/cell type
Mesenchymal stem cells 36408942    
 Gene ontology annotations for SMARCA1
Molecular Function
    DNA binding GO:0003677 IBA
    chromatin binding GO:0003682 IBA
    helicase activity GO:0004386 IEA
    protein binding GO:0005515 IPI
    ATP binding GO:0005524 IEA
    ATP-dependent activity, acting on DNA GO:0008094 IDA
    hydrolase activity GO:0016787 IEA
    nucleosome binding GO:0031491 IEA
    ATP-dependent DNA/DNA annealing activity GO:0036310 IDA
    RNA polymerase II-specific DNA-binding transcription factor binding GO:0061629 IPI
    ATP-dependent chromatin remodeler activity GO:0140658 IDA
    ATP-dependent chromatin remodeler activity GO:0140658 IDA
    nucleosome array spacer activity GO:0140750 IBA
Biological Process
    chromatin remodeling GO:0006338 IDA
    regulation of DNA-templated transcription GO:0006355 IDA
    brain development GO:0007420 IMP
    brain development GO:0007420 NAS
    neuron differentiation GO:0030182 ISS
    heterochromatin formation GO:0031507 IBA
    positive regulation of DNA-templated transcription GO:0045893 IMP
    positive regulation of transcription by RNA polymerase II GO:0045944 IBA
    positive regulation of transcription by RNA polymerase II GO:0045944 IMP
Subcellular Localization
    chromatin GO:0000785 IBA
    nucleus GO:0005634 IBA
    nucleus GO:0005634 IDA
    nucleus GO:0005634 NAS
    nucleoplasm GO:0005654 IDA
    NURF complex GO:0016589 IDA
    NURF complex GO:0016589 IPI
    intracellular membrane-bounded organelle GO:0043231 IDA
    CERF complex GO:0090537 IDA
    CERF complex GO:0090537 IPI
    ATPase complex GO:1904949 IDA
 Experiment description of studies that identified SMARCA1 in exosomes
1
Experiment ID 488
MISEV standards
EM
Biophysical techniques
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
CANX
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Homo sapiens
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Mesenchymal stem cells
Sample name UCMSC
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
 Protein-protein interactions for SMARCA1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 SLFN11 91607
Affinity Capture-MS Homo sapiens
2 HIST2H2BE 8349
Affinity Capture-MS Homo sapiens
3 GATAD2B 57459
Affinity Capture-MS Homo sapiens
4 COIL  
Proximity Label-MS Homo sapiens
5 DEF6 50619
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
6 KPNA1 3836
Affinity Capture-MS Homo sapiens
7 KLF9 687
Proximity Label-MS Homo sapiens
8 DZIP3  
Affinity Capture-MS Homo sapiens
9 LHX2  
Proximity Label-MS Homo sapiens
10 HIST1H2BG 8339
Proximity Label-MS Homo sapiens
11 RPS19 6223
Affinity Capture-MS Homo sapiens
12 KIF20A 10112
Affinity Capture-MS Homo sapiens
13 BRD2  
Affinity Capture-MS Homo sapiens
14 MAP4K4 9448
Affinity Capture-MS Homo sapiens
15 PGR  
Affinity Capture-Western Homo sapiens
16 SAP30 8819
Affinity Capture-MS Homo sapiens
17 CENPA  
Proximity Label-MS Homo sapiens
18 APEX1 328
Proximity Label-MS Homo sapiens
19 RUVBL1 8607
Co-fractionation Homo sapiens
20 CBX1 10951
Affinity Capture-MS Homo sapiens
21 MTF2  
Affinity Capture-MS Homo sapiens
22 SSRP1 6749
Affinity Capture-MS Homo sapiens
23 CHAF1A  
Affinity Capture-MS Homo sapiens
24 MYO1E 4643
Affinity Capture-MS Homo sapiens
25 RFXANK  
Affinity Capture-MS Homo sapiens
26 CDK2AP1  
Affinity Capture-MS Homo sapiens
27 FBXW7  
Affinity Capture-MS Homo sapiens
28 PRC1 9055
Affinity Capture-MS Homo sapiens
29 ARID4B  
Affinity Capture-MS Homo sapiens
30 ZNF512B  
Affinity Capture-MS Homo sapiens
31 DDRGK1 65992
Affinity Capture-MS Homo sapiens
32 POLR1E  
Proximity Label-MS Homo sapiens
33 SIN3B  
Affinity Capture-MS Homo sapiens
34 NFATC2IP  
Affinity Capture-MS Homo sapiens
35 MAGEA3  
Affinity Capture-MS Homo sapiens
36 IDO2  
Affinity Capture-MS Homo sapiens
37 EED  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
38 KLHL20  
Affinity Capture-MS Homo sapiens
39 PHF1  
Affinity Capture-MS Homo sapiens
40 SETD1A 9739
Affinity Capture-Western Homo sapiens
41 CHD3 1107
Affinity Capture-MS Homo sapiens
42 NCK1 4690
Affinity Capture-MS Homo sapiens
43 MTA2 9219
Affinity Capture-MS Homo sapiens
44 RBPJ 3516
Affinity Capture-MS Homo sapiens
45 KIF14 9928
Affinity Capture-MS Homo sapiens
46 EEA1 8411
Affinity Capture-MS Homo sapiens
47 C1orf106  
Affinity Capture-MS Homo sapiens
48 H2AFZ 3015
Affinity Capture-MS Homo sapiens
49 UFL1 23376
Affinity Capture-MS Homo sapiens
50 HMGA1 3159
Affinity Capture-MS Homo sapiens
51 RBBP7 5931
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
52 FOXC1  
Affinity Capture-MS Homo sapiens
53 SHPRH  
Affinity Capture-MS Homo sapiens
54 DDX21 9188
Co-fractionation Homo sapiens
55 C17orf49 124944
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
56 LYN 4067
Proximity Label-MS Homo sapiens
57 PRDM2  
Affinity Capture-MS Homo sapiens
58 CBX3 11335
Proximity Label-MS Homo sapiens
59 TBC1D32 221322
Proximity Label-MS Homo sapiens
60 VRK1 7443
Affinity Capture-MS Homo sapiens
61 LIN52  
Affinity Capture-MS Homo sapiens
62 HIST1H2AM 8336
Affinity Capture-MS Homo sapiens
63 SMARCA4 6597
Co-fractionation Homo sapiens
64 DPY30 84661
Affinity Capture-MS Homo sapiens
65 POGZ 23126
Affinity Capture-MS Homo sapiens
66 NTRK1 4914
Affinity Capture-MS Homo sapiens
67 FOXK2  
Affinity Capture-MS Homo sapiens
68 CECR2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
69 RAD18  
Affinity Capture-MS Homo sapiens
70 TEAD2  
Affinity Capture-MS Homo sapiens
71 BRMS1L  
Affinity Capture-MS Homo sapiens
72 MYBL2 4605
Affinity Capture-MS Homo sapiens
73 HJURP  
Affinity Capture-MS Homo sapiens
74 SUDS3  
Affinity Capture-MS Homo sapiens
75 MBD3 53615
Affinity Capture-MS Homo sapiens
76 NECAP1 25977
Affinity Capture-MS Homo sapiens
77 PIPSL 266971
Affinity Capture-MS Homo sapiens
78 SMARCC2 6601
Co-fractionation Homo sapiens
79 CD3EAP  
Proximity Label-MS Homo sapiens
80 BCL11A 53335
Affinity Capture-MS Homo sapiens
81 NUMA1 4926
Affinity Capture-MS Homo sapiens
82 CHRAC1  
Affinity Capture-MS Homo sapiens
83 ZBTB2 57621
Affinity Capture-MS Homo sapiens
84 HIST1H3A 8350
Affinity Capture-Western Homo sapiens
Proximity Label-MS Homo sapiens
85 RPS2 6187
Affinity Capture-MS Homo sapiens
86 BAZ1B 9031
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
87 SMARCA5 8467
Cross-Linking-MS (XL-MS) Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
88 TMEM128  
Affinity Capture-MS Homo sapiens
89 FOXG1  
Affinity Capture-MS Homo sapiens
90 BPTF 2186
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
91 H1F0 3005
Affinity Capture-MS Homo sapiens
92 FOXL1  
Affinity Capture-MS Homo sapiens
93 RBBP4 5928
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
94 HNRNPCL2 440563
Affinity Capture-MS Homo sapiens
95 ARID1B 57492
Affinity Capture-MS Homo sapiens
96 TFPT  
Co-fractionation Homo sapiens
97 LIN9  
Affinity Capture-MS Homo sapiens
98 TOP1 7150
Affinity Capture-MS Homo sapiens
99 MBD2 8932
Affinity Capture-MS Homo sapiens
100 BAZ1A 11177
Affinity Capture-MS Homo sapiens
101 PARP1 142
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
102 FOXQ1  
Affinity Capture-MS Homo sapiens
103 HAT1 8520
Affinity Capture-MS Homo sapiens
104 NANOG  
Affinity Capture-MS Homo sapiens
105 BRD3 8019
Affinity Capture-MS Homo sapiens
106 PYHIN1  
Affinity Capture-MS Homo sapiens
107 SUZ12  
Affinity Capture-MS Homo sapiens
108 GATAD2A 54815
Affinity Capture-MS Homo sapiens
109 FTL 2512
Affinity Capture-MS Homo sapiens
110 GRK5 2869
Affinity Capture-MS Homo sapiens
111 PLEKHA4 57664
Affinity Capture-MS Homo sapiens
112 CTNNA3  
Affinity Capture-MS Homo sapiens
113 TP53 7157
Affinity Capture-MS Homo sapiens
114 SAP130  
Affinity Capture-MS Homo sapiens
115 MAX  
Affinity Capture-MS Homo sapiens
116 SIN3A  
Affinity Capture-MS Homo sapiens
117 MTA1 9112
Affinity Capture-MS Homo sapiens
118 FOXJ2  
Affinity Capture-MS Homo sapiens
119 SMARCC1 6599
Co-fractionation Homo sapiens
120 POLE3  
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
121 HMGN5 79366
Affinity Capture-MS Homo sapiens
122 CHD4 1108
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
123 EPN2 22905
Affinity Capture-MS Homo sapiens
124 HMGXB4 10042
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
125 EZH2  
Affinity Capture-MS Homo sapiens
126 CIT 11113
Affinity Capture-MS Homo sapiens
127 MTA3 57504
Affinity Capture-MS Homo sapiens
128 TXNIP 10628
Affinity Capture-MS Homo sapiens
129 PTGES3 10728
Affinity Capture-MS Homo sapiens
130 GATAD1  
Affinity Capture-MS Homo sapiens
131 USF1  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
132 RSF1  
Affinity Capture-MS Homo sapiens
133 CHAF1B  
Affinity Capture-MS Homo sapiens
134 PWWP2A  
Affinity Capture-MS Homo sapiens
135 NUCKS1 64710
Affinity Capture-MS Homo sapiens
136 FOXE1  
Affinity Capture-MS Homo sapiens
137 ZNF467  
Affinity Capture-MS Homo sapiens
138 LIN37  
Affinity Capture-MS Homo sapiens
139 POLD1 5424
Affinity Capture-MS Homo sapiens
View the network image/svg+xml
 Pathways in which SMARCA1 is involved
No pathways found





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