Gene ontology annotations for SLC30A1
Experiment description of studies that identified SLC30A1 in exosomes
1
Experiment ID
489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 6
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
2
Experiment ID
490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 7
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
3
Experiment ID
491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 8
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
4
Experiment ID
492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 9
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
5
Experiment ID
363
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
6
Experiment ID
364
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
7
Experiment ID
365
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
8
Experiment ID
237
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|HSC70|GAPDH
Enriched markers
✔
HSP90B1
Negative markers
✔
qNano
Particle analysis
Identified molecule
mRNA
Identification method
RNA Sequencing
PubMed ID
26054723
Organism
Homo sapiens
Experiment description
Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors
"He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name
Carcinogenesis
Publication year
2015
Sample
Hepatocytes
Sample name
MIHA
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation Sucrose density gradient
Flotation density
1.13-1.19 g/mL
Molecules identified in the study
Protein RNA
Methods used in the study
Western blotting Mass spectrometry RNA Sequencing
9
Experiment ID
488
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Homo sapiens
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Mesenchymal stem cells
Sample name
UCMSC
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
10
Experiment ID
211
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|EpCAM|TFRC
Enriched markers
✔
cytochrome c|GOLGA2
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23333927
Organism
Homo sapiens
Experiment description
Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors
"Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name
J Proteomics
Publication year
2013
Sample
Ovarian cancer cells
Sample name
IGROV1
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
1.09-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
11
Experiment ID
212
MISEV standards
✔
CEM
Biophysical techniques
✔
TSG101|Alix|EpCAM|TFRC
Enriched markers
✔
Cytochrome C|GOLGA2
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23333927
Organism
Homo sapiens
Experiment description
Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors
"Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name
J Proteomics
Publication year
2013
Sample
Ovarian cancer cells
Sample name
OVCAR-3
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
1.09-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
Protein-protein interactions for SLC30A1
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
XXYLT1
152002
Affinity Capture-MS
Homo sapiens
2
PTGIR
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
3
METTL9
51108
Affinity Capture-MS
Homo sapiens
4
CLGN
1047
Affinity Capture-MS
Homo sapiens
5
TMEM169
Affinity Capture-MS
Homo sapiens
6
FAM189B
Affinity Capture-MS
Homo sapiens
7
LGALS9
3965
Affinity Capture-MS
Homo sapiens
8
RAB35
11021
Proximity Label-MS
Homo sapiens
9
CSGALNACT2
55454
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
10
IL17RB
Affinity Capture-MS
Homo sapiens
11
SLC31A1
1317
Affinity Capture-MS
Homo sapiens
12
EBAG9
9166
Proximity Label-MS
Homo sapiens
13
PTH1R
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
14
OCLN
100506658
Proximity Label-MS
Homo sapiens
15
CANX
821
Affinity Capture-MS
Homo sapiens
16
LAMTOR1
55004
Proximity Label-MS
Homo sapiens
17
MARCKS
4082
Proximity Label-MS
Homo sapiens
18
LAMP3
Proximity Label-MS
Homo sapiens
19
XPO1
7514
Co-fractionation
Homo sapiens
20
CD83
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
21
MTNR1B
Two-hybrid
Homo sapiens
22
GALNT6
11226
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
23
LAMP1
3916
Proximity Label-MS
Homo sapiens
24
SRSF1
6426
Co-fractionation
Homo sapiens
25
LGALS3
3958
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
26
CYBB
1536
Affinity Capture-MS
Homo sapiens
27
CUL3
8452
Affinity Capture-MS
Homo sapiens
28
GJA1
2697
Proximity Label-MS
Homo sapiens
29
GJD3
Proximity Label-MS
Homo sapiens
30
MTNR1A
Two-hybrid
Homo sapiens
31
LAMP2
3920
Proximity Label-MS
Homo sapiens
32
TNFSF12
8742
Affinity Capture-MS
Homo sapiens
33
ARF6
382
Proximity Label-MS
Homo sapiens
34
GPR114
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
35
CXADR
1525
Proximity Label-MS
Homo sapiens
36
ERGIC1
57222
Proximity Label-MS
Homo sapiens
37
C11orf52
91894
Proximity Label-MS
Homo sapiens
38
LMAN1
3998
Proximity Label-MS
Homo sapiens
39
LYN
4067
Proximity Label-MS
Homo sapiens
40
PHLPP1
Proximity Label-MS
Homo sapiens
41
MCAM
4162
Proximity Label-MS
Homo sapiens
42
RAB3B
5865
Proximity Label-MS
Homo sapiens
43
RAB5A
5868
Proximity Label-MS
Homo sapiens
44
TTYH1
Affinity Capture-MS
Homo sapiens
45
DNAJC5
80331
Proximity Label-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
46
GALNT10
55568
Affinity Capture-MS
Homo sapiens
47
CHRNA9
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
48
TPST2
8459
Affinity Capture-MS
Homo sapiens
49
CDH1
999
Proximity Label-MS
Homo sapiens
50
EPHA2
1969
Proximity Label-MS
Homo sapiens
51
DIRAS3
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
52
DNAJC5B
Proximity Label-MS
Homo sapiens
53
PRPH2
5961
Affinity Capture-MS
Homo sapiens
54
LGALS9B
284194
Affinity Capture-MS
Homo sapiens
55
RAB9A
9367
Proximity Label-MS
Homo sapiens
56
STS
412
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
57
IL20RA
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
58
RAB2A
5862
Proximity Label-MS
Homo sapiens
59
TGFA
Affinity Capture-MS
Homo sapiens
60
MARCH4
Affinity Capture-MS
Homo sapiens
61
KRAS
3845
Proximity Label-MS
Homo sapiens
62
ATP6V1B1
525
Co-fractionation
Homo sapiens
63
RHOB
388
Proximity Label-MS
Homo sapiens
64
CDH16
Affinity Capture-MS
Homo sapiens
65
Bmpr1a
Affinity Capture-MS
Mus musculus
66
LGALS8
3964
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
67
RAB5C
5878
Proximity Label-MS
Homo sapiens
68
LMNA
4000
Proximity Label-MS
Homo sapiens
69
CAV1
857
Proximity Label-MS
Homo sapiens
70
CTDSPL
10217
Proximity Label-MS
Homo sapiens
71
B3GALT5
Affinity Capture-MS
Homo sapiens
72
CSGALNACT1
55790
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
73
FLOT1
10211
Proximity Label-MS
Homo sapiens
74
STX6
10228
Proximity Label-MS
Homo sapiens
75
CLRN2
Affinity Capture-MS
Homo sapiens
View the network
image/svg+xml
Pathways in which SLC30A1 is involved