Gene description for TDG
Gene name thymine-DNA glycosylase
Gene symbol TDG
Other names/aliases hTDG
Species Homo sapiens
 Database cross references - TDG
ExoCarta ExoCarta_6996
Vesiclepedia VP_6996
Entrez Gene 6996
HGNC 11700
MIM 601423
UniProt Q13569  
 TDG identified in exosomes derived from the following tissue/cell type
Hepatocellular carcinoma cells 26054723    
 Gene ontology annotations for TDG
Molecular Function
    magnesium ion binding GO:0000287 IDA
    nucleic acid binding GO:0003676 EXP
    DNA binding GO:0003677 ISS
    damaged DNA binding GO:0003684 TAS
    double-stranded DNA binding GO:0003690 IDA
    transcription coregulator activity GO:0003712 IEA
    uracil DNA N-glycosylase activity GO:0004844 IBA
    uracil DNA N-glycosylase activity GO:0004844 IDA
    protein kinase C binding GO:0005080 IEA
    protein binding GO:0005515 IPI
    ATP binding GO:0005524 IDA
    pyrimidine-specific mismatch base pair DNA N-glycosylase activity GO:0008263 IBA
    pyrimidine-specific mismatch base pair DNA N-glycosylase activity GO:0008263 IDA
    pyrimidine-specific mismatch base pair DNA N-glycosylase activity GO:0008263 IMP
    DNA N-glycosylase activity GO:0019104 IDA
    DNA N-glycosylase activity GO:0019104 IMP
    DNA N-glycosylase activity GO:0019104 TAS
    protein domain specific binding GO:0019904 IEA
    mismatched DNA binding GO:0030983 IDA
    sodium ion binding GO:0031402 IDA
    chloride ion binding GO:0031404 IDA
    SUMO binding GO:0032183 IPI
    G/U mismatch-specific uracil-DNA glycosylase activity GO:0043739 IMP
    DNA-binding transcription factor binding GO:0140297 IEA
    G/T mismatch-specific thymine-DNA glycosylase activity GO:0141016 IEA
Biological Process
    negative regulation of transcription by RNA polymerase II GO:0000122 IEA
    base-excision repair GO:0006284 IDA
    base-excision repair, AP site formation GO:0006285 IBA
    epigenetic regulation of gene expression GO:0040029 ISS
    depyrimidination GO:0045008 TAS
    regulation of embryonic development GO:0045995 IEA
    chromosomal 5-methylcytosine DNA demethylation, oxidation pathway GO:0141167 TAS
Subcellular Localization
    nucleus GO:0005634 IBA
    nucleus GO:0005634 IDA
    nucleoplasm GO:0005654 IDA
    nucleoplasm GO:0005654 TAS
    plasma membrane GO:0005886 IDA
    PML body GO:0016605 IEA
 Experiment description of studies that identified TDG in exosomes
1
Experiment ID 236
MISEV standards
EM
Biophysical techniques
TSG101|Alix|HSC70|GAPDH
Enriched markers
HSP90B1
Negative markers
qNano
Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors "He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocellular carcinoma cells
Sample name MHCC97L
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RT-PCR
RNA Sequencing
 Protein-protein interactions for TDG
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 XRCC1 7515
Affinity Capture-Western Homo sapiens
2 DTL  
Biochemical Activity Homo sapiens
Affinity Capture-Western Homo sapiens
3 VDR  
Reconstituted Complex Homo sapiens
4 RARA 5914
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
5 SKIL  
Two-hybrid Homo sapiens
6 TP53 7157
Two-hybrid Homo sapiens
7 PCNA 5111
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
8 Hspa14 50497
Affinity Capture-MS Mus musculus
9 TTC4  
Co-fractionation Homo sapiens
10 DNMT3A 1788
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
11 RAD23B 5887
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
12 MX1 4599
Two-hybrid Homo sapiens
13 RNF4 6047
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
14 SMAD4  
Two-hybrid Homo sapiens
15 ROCK2 9475
Co-fractionation Homo sapiens
16 PGR  
Reconstituted Complex Homo sapiens
17 CREBBP  
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Co-fractionation Homo sapiens
Reconstituted Complex Homo sapiens
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
18 IKZF1  
Two-hybrid Homo sapiens
19 Hdac6  
Affinity Capture-MS Mus musculus
20 TP73  
Two-hybrid Homo sapiens
21 NXF1 10482
Affinity Capture-RNA Homo sapiens
22 ESR1  
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
23 APEX1 328
Affinity Capture-RNA Homo sapiens
24 THRA  
Reconstituted Complex Homo sapiens
25 FANCA  
Affinity Capture-Luminescence Homo sapiens
26 UBE2I 7329
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
27 DNMT3B  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
28 MYC  
Affinity Capture-MS Homo sapiens
29 EPM2A  
Two-hybrid Homo sapiens
30 TCF4  
Affinity Capture-Western Homo sapiens
31 RXRA 6256
Reconstituted Complex Homo sapiens
32 ZSCAN26  
Affinity Capture-MS Homo sapiens
33 SUMO2 6613
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
34 JUNB  
Two-hybrid Homo sapiens
35 SERBP1 26135
Two-hybrid Homo sapiens
36 SNX2 6643
Co-fractionation Homo sapiens
37 PML 5371
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Co-localization Homo sapiens
38 SUMO3 6612
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
39 AR 367
Reconstituted Complex Homo sapiens
40 NFYA 4800
Co-fractionation Homo sapiens
41 NR3C1 2908
Reconstituted Complex Homo sapiens
42 KDM6B 23135
Affinity Capture-Western Homo sapiens
43 RAD51  
Two-hybrid Homo sapiens
44 NAA10 8260
Co-fractionation Homo sapiens
45 EP300 2033
Biochemical Activity Homo sapiens
46 SUMO1 7341
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
Co-crystal Structure Homo sapiens
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
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