Gene description for SPN
Gene name
sialophorin
Gene symbol
SPN
Other names/aliases
CD43 GALGP GPL115 LSN
Species
Homo sapiens
Database cross references - SPN
ExoCarta
ExoCarta_6693
Vesiclepedia
VP_6693
Entrez Gene
6693
HGNC
11249
MIM
182160
UniProt
P16150
SPN identified in exosomes derived from the following tissue/cell type
B cells
20458337
B cells
20458337
B cells
20458337
Platelets
25332113
Platelets
25332113
Platelets
25332113
Thymus
23844026
Gene ontology annotations for SPN
Experiment description of studies that identified SPN in exosomes
1
Experiment ID
79
MISEV standards
✘
Biophysical techniques
✔
CD81|MHCII
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
20458337
Organism
Homo sapiens
Experiment description
MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis - Sample 1
Authors
"Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M, Stoorvogel W."
Journal name
ICB
Publication year
2010
Sample
B cells
Sample name
RN (HLA-DR15)
Isolation/purification methods
Differential centrifugation Sucrose density gradient Immunobeads (MHC Class II)
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry [FT-ICR] Western blotting
2
Experiment ID
80
MISEV standards
✘
Biophysical techniques
✔
CD81|MHCII
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
20458337
Organism
Homo sapiens
Experiment description
MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis -Sample 2
Authors
"Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M, Stoorvogel W."
Journal name
ICB
Publication year
2010
Sample
B cells
Sample name
RN (HLA-DR15)
Isolation/purification methods
Differential centrifugation Sucrose density gradient Immunobeads (MHC Class II)
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry [FT-ICR] Western blotting
3
Experiment ID
81
MISEV standards
✘
Biophysical techniques
✔
CD81|MHCII
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
20458337
Organism
Homo sapiens
Experiment description
MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis - Sample 3
Authors
"Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M, Stoorvogel W."
Journal name
ICB
Publication year
2010
Sample
B cells
Sample name
RN (HLA-DR15)
Isolation/purification methods
Differential centrifugation Sucrose density gradient Immunobeads (MHC Class II)
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry [FT-ICR] Western blotting
4
Experiment ID
231
MISEV standards
✘
Biophysical techniques
✔
Alix|CD63|CD9
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
25332113
Organism
Homo sapiens
Experiment description
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name
Transfusion
Publication year
2015
Sample
Platelets
Sample name
PL-Exs - Rep 1
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient
Flotation density
1.12-1.15 g/mL
Molecules identified in the study
Protein Lipids
Methods used in the study
Western blotting Mass spectrometry
5
Experiment ID
232
MISEV standards
✘
Biophysical techniques
✘
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
25332113
Organism
Homo sapiens
Experiment description
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name
Transfusion
Publication year
2015
Sample
Platelets
Sample name
PL-Exs - Rep 2
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient
Flotation density
1.12-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
6
Experiment ID
233
MISEV standards
✘
Biophysical techniques
✘
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
25332113
Organism
Homo sapiens
Experiment description
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name
Transfusion
Publication year
2015
Sample
Platelets
Sample name
PL-Exs - Rep 3
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient
Flotation density
1.12-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
7
Experiment ID
217
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|CD81|CD9|CD63
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23844026
Organism
Homo sapiens
Experiment description
Characterization of human thymic exosomes.
Authors
"Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O."
Journal name
PLoS One
Publication year
2013
Sample
Thymus
Sample name
Normal-Thymus
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
Protein-protein interactions for SPN
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
ATR
Affinity Capture-MS
Homo sapiens
2
MYADM
91663
Affinity Capture-MS
Homo sapiens
3
FANCD2
Affinity Capture-MS
Homo sapiens
4
ARL13B
200894
Two-hybrid
Homo sapiens
5
MAN2B2
23324
Affinity Capture-MS
Homo sapiens
6
KIF14
9928
Affinity Capture-MS
Homo sapiens
7
ATP1A3
478
Affinity Capture-MS
Homo sapiens
8
PEX19
5824
Affinity Capture-MS
Homo sapiens
9
HEATR1
55127
Affinity Capture-MS
Homo sapiens
10
UBQLN2
29978
Two-hybrid
Homo sapiens
11
EIF2B2
8892
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
12
EZR
7430
Affinity Capture-Western
Homo sapiens
Reconstituted Complex
Homo sapiens
13
LGALS3
3958
Affinity Capture-MS
Homo sapiens
14
IPO11
51194
Affinity Capture-MS
Homo sapiens
15
ERGIC3
51614
Two-hybrid
Homo sapiens
16
LGALS1
3956
Affinity Capture-Western
Homo sapiens
Affinity Capture-MS
Homo sapiens
17
GBF1
8729
Affinity Capture-MS
Homo sapiens
18
SHMT2
6472
Affinity Capture-RNA
Homo sapiens
19
EIF2B3
8891
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
20
EIF2B5
8893
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
21
PI4KA
5297
Affinity Capture-MS
Homo sapiens
22
NUP160
23279
Affinity Capture-MS
Homo sapiens
23
GALNT12
79695
Affinity Capture-MS
Homo sapiens
24
TNPO2
30000
Affinity Capture-MS
Homo sapiens
25
SAAL1
113174
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
26
XPO4
64328
Affinity Capture-MS
Homo sapiens
27
PBXIP1
57326
Affinity Capture-MS
Homo sapiens
28
MSN
4478
Affinity Capture-Western
Homo sapiens
Reconstituted Complex
Homo sapiens
Reconstituted Complex
Homo sapiens
29
MTOR
2475
Affinity Capture-MS
Homo sapiens
30
SLC39A11
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
31
SPAG9
9043
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
32
PPFIBP1
8496
Affinity Capture-MS
Homo sapiens
33
PLP2
5355
Two-hybrid
Homo sapiens
34
NCAPG2
54892
Affinity Capture-MS
Homo sapiens
35
METTL9
51108
Affinity Capture-MS
Homo sapiens
36
EIF2B1
1967
Affinity Capture-MS
Homo sapiens
37
LGALS8
3964
Affinity Capture-MS
Homo sapiens
38
DYM
Affinity Capture-MS
Homo sapiens
39
NUP85
79902
Affinity Capture-MS
Homo sapiens
40
THADA
63892
Affinity Capture-MS
Homo sapiens
41
SGTA
6449
Two-hybrid
Homo sapiens
42
C17orf62
79415
Two-hybrid
Homo sapiens
43
EIF2B4
8890
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
44
DAXX
Two-hybrid
Homo sapiens
45
NCDN
23154
Affinity Capture-MS
Homo sapiens
46
CXCL16
58191
Two-hybrid
Homo sapiens
View the network
image/svg+xml
Pathways in which SPN is involved