Gene description for PSD3
Gene name pleckstrin and Sec7 domain containing 3
Gene symbol PSD3
Other names/aliases EFA6D
EFA6R
HCA67
Species Homo sapiens
 Database cross references - PSD3
ExoCarta ExoCarta_23362
Vesiclepedia VP_23362
Entrez Gene 23362
HGNC 19093
MIM 614440
UniProt Q9NYI0  
 PSD3 identified in sEVs derived from the following tissue/cell type
Mesenchymal stem cells 36408942    
Retinal pigment epithelial cells 35333565    
Retinal pigment epithelial cells 35333565    
 Gene ontology annotations for PSD3
Molecular Function
    guanyl-nucleotide exchange factor activity GO:0005085 IEA
Biological Process
    regulation of ARF protein signal transduction GO:0032012 IEA
Subcellular Localization
    postsynaptic density GO:0014069 IEA
    ruffle membrane GO:0032587 IBA
    ruffle membrane GO:0032587 ISS
 Experiment description of studies that identified PSD3 in sEVs
1
Experiment ID 488
MISEV standards
EM
Biophysical techniques
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
CANX
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Homo sapiens
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Mesenchymal stem cells
Sample name UCMSC
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 834
MISEV standards
EM
Biophysical techniques
LAMP2|CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
CANX
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35333565    
Organism Homo sapiens
Experiment description LAMP2A regulates the loading of proteins into exosomes
Authors "Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name Sci Adv
Publication year 2022
Sample Retinal pigment epithelial cells
Sample name ARPE-19
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
3
Experiment ID 835
MISEV standards
EM
Biophysical techniques
CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
CANX
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35333565    
Organism Homo sapiens
Experiment description LAMP2A regulates the loading of proteins into exosomes
Authors "Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name Sci Adv
Publication year 2022
Sample Retinal pigment epithelial cells
Sample name ARPE-19
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
 Protein-protein interactions for PSD3
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 YWHAH 7533
Affinity Capture-MS Homo sapiens
2 PMS2  
Affinity Capture-MS Homo sapiens
3 PTPRG 5793
Proximity Label-MS Homo sapiens
4 RAB35 11021
Proximity Label-MS Homo sapiens
5 NPAS1  
Affinity Capture-MS Homo sapiens
6 TP53 7157
Synthetic Growth Defect Homo sapiens
7 OCLN 100506658
Proximity Label-MS Homo sapiens
8 LAMTOR1 55004
Proximity Label-MS Homo sapiens
9 MARCKS 4082
Proximity Label-MS Homo sapiens
10 LAMP3  
Proximity Label-MS Homo sapiens
11 YWHAZ 7534
Affinity Capture-MS Homo sapiens
12 GJA1 2697
Proximity Label-MS Homo sapiens
13 EPB41L4A 64097
Proximity Label-MS Homo sapiens
14 LAMP1 3916
Proximity Label-MS Homo sapiens
15 PTPRA 5786
Proximity Label-MS Homo sapiens
16 LCK 3932
Proximity Label-MS Homo sapiens
17 MX1 4599
Two-hybrid Homo sapiens
18 COPB2 9276
Affinity Capture-MS Homo sapiens
19 MLH1 4292
Affinity Capture-MS Homo sapiens
20 ARF6 382
Proximity Label-MS Homo sapiens
21 CXADR 1525
Proximity Label-MS Homo sapiens
22 COPA 1314
Affinity Capture-MS Homo sapiens
23 C11orf52 91894
Proximity Label-MS Homo sapiens
24 LYN 4067
Proximity Label-MS Homo sapiens
25 MCAM 4162
Proximity Label-MS Homo sapiens
26 DNAJC5 80331
Proximity Label-MS Homo sapiens
27 RAB2A 5862
Proximity Label-MS Homo sapiens
28 DIRAS3  
Proximity Label-MS Homo sapiens
29 METTL21B  
Affinity Capture-MS Homo sapiens
30 EPHA2 1969
Proximity Label-MS Homo sapiens
31 KRAS 3845
Proximity Label-MS Homo sapiens
32 RHOB 388
Proximity Label-MS Homo sapiens
33 CAV1 857
Proximity Label-MS Homo sapiens
34 CTDSPL 10217
Proximity Label-MS Homo sapiens
35 FLOT1 10211
Proximity Label-MS Homo sapiens
36 ARAP1 116985
Two-hybrid Homo sapiens
View the network image/svg+xml
 Pathways in which PSD3 is involved
No pathways found





Perform bioinformatics analysis of your extracellular vesicle data set using FunRich, a open access standalone tool. NEW UPDATED VERSION OF FunRich available for download (12/09/2016) from here