Gene description for NT5DC1
Gene name
5'-nucleotidase domain containing 1
Gene symbol
NT5DC1
Other names/aliases
C6orf200 LP2642 NT5C2L1
Species
Homo sapiens
Database cross references - NT5DC1
ExoCarta
ExoCarta_221294
Vesiclepedia
VP_221294
Entrez Gene
221294
HGNC
21556
UniProt
Q5TFE4
NT5DC1 identified in sEVs derived from the following tissue/cell type
Chondrocytes
35931686
Chondrocytes
35931686
Ovarian cancer cells
23333927
Ovarian cancer cells
23333927
Gene ontology annotations for NT5DC1
Experiment description of studies that identified NT5DC1 in sEVs
1
Experiment ID
497
MISEV standards
✘
Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35931686
Organism
Homo sapiens
Experiment description
Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors
"Varela-EirÃn M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, GarcÃa-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name
Cell Death Dis
Publication year
2022
Sample
Chondrocytes
Sample name
T/C-28a2
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
2
Experiment ID
498
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35931686
Organism
Homo sapiens
Experiment description
Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors
"Varela-EirÃn M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, GarcÃa-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name
Cell Death Dis
Publication year
2022
Sample
Chondrocytes
Sample name
T/C-28a2
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
3
Experiment ID
211
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|EpCAM|TFRC
Enriched markers
✔
cytochrome c|GOLGA2
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23333927
Organism
Homo sapiens
Experiment description
Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors
"Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name
J Proteomics
Publication year
2013
Sample
Ovarian cancer cells
Sample name
IGROV1
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
1.09-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
4
Experiment ID
212
MISEV standards
✔
CEM
Biophysical techniques
✔
TSG101|Alix|EpCAM|TFRC
Enriched markers
✔
Cytochrome C|GOLGA2
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23333927
Organism
Homo sapiens
Experiment description
Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors
"Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name
J Proteomics
Publication year
2013
Sample
Ovarian cancer cells
Sample name
OVCAR-3
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
1.09-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
Protein-protein interactions for NT5DC1
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
ACACB
32
Affinity Capture-MS
Homo sapiens
2
SERBP1
26135
Affinity Capture-MS
Homo sapiens
3
TRABD
80305
Affinity Capture-MS
Homo sapiens
4
GFAP
2670
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
5
SRM
6723
Co-fractionation
Homo sapiens
6
HSP90AA4P
3323
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
7
PKLR
5313
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
8
HBD
3045
Affinity Capture-MS
Homo sapiens
9
UBA3
9039
Co-fractionation
Homo sapiens
10
RPA3
6119
Proximity Label-MS
Homo sapiens
11
NIF3L1
60491
Co-fractionation
Homo sapiens
12
OGT
8473
Reconstituted Complex
Homo sapiens
13
UCHL3
7347
Co-fractionation
Homo sapiens
14
GPAT2
Affinity Capture-MS
Homo sapiens
15
ECHS1
1892
Co-fractionation
Homo sapiens
View the network
image/svg+xml
Pathways in which NT5DC1 is involved
No pathways found