Gene description for TRIM58
Gene name tripartite motif containing 58
Gene symbol TRIM58
Other names/aliases BIA2
Species Homo sapiens
 Database cross references - TRIM58
ExoCarta ExoCarta_25893
Vesiclepedia VP_25893
Entrez Gene 25893
HGNC 24150
UniProt Q8NG06  
 TRIM58 identified in sEVs derived from the following tissue/cell type
Platelets 25332113    
Platelets 25332113    
Platelets 25332113    
 Gene ontology annotations for TRIM58
Molecular Function
    zinc ion binding GO:0008270 IEA
    dynein heavy chain binding GO:0045504 IEA
    dynein intermediate chain binding GO:0045505 IEA
    ubiquitin protein ligase activity GO:0061630 IBA
Biological Process
    protein polyubiquitination GO:0000209 IEA
    ubiquitin-dependent protein catabolic process GO:0006511 IEA
    regulation of gene expression GO:0010468 IBA
    innate immune response GO:0045087 IBA
    protein autoubiquitination GO:0051865 IEA
    positive regulation of erythrocyte enucleation GO:0061931 IEA
    regulation of nuclear migration along microtubule GO:1902838 IEA
Subcellular Localization
    cytoplasm GO:0005737 IBA
 Experiment description of studies that identified TRIM58 in sEVs
1
Experiment ID 231
MISEV standards
Biophysical techniques
Alix|CD63|CD9
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25332113    
Organism Homo sapiens
Experiment description Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors "Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name Transfusion
Publication year 2015
Sample Platelets
Sample name PL-Exs - Rep 1
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Optiprep density gradient
Flotation density 1.12-1.15 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Western blotting
Mass spectrometry
2
Experiment ID 232
MISEV standards
Biophysical techniques
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25332113    
Organism Homo sapiens
Experiment description Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors "Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name Transfusion
Publication year 2015
Sample Platelets
Sample name PL-Exs - Rep 2
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Optiprep density gradient
Flotation density 1.12-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
3
Experiment ID 233
MISEV standards
Biophysical techniques
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25332113    
Organism Homo sapiens
Experiment description Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors "Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name Transfusion
Publication year 2015
Sample Platelets
Sample name PL-Exs - Rep 3
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Optiprep density gradient
Flotation density 1.12-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for TRIM58
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 TLR2 7097
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
2 FBXW7  
Synthetic Lethality Homo sapiens
3 DYNC1H1 1778
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
4 ACTB 60
Affinity Capture-MS Homo sapiens
5 HMGA1 3159
Affinity Capture-MS Homo sapiens
6 HNRNPU 3192
Affinity Capture-MS Homo sapiens
7 UBE2D3 7323
Reconstituted Complex Homo sapiens
8 TUBA1A 7846
Affinity Capture-MS Homo sapiens
9 DYNC1I1  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Biochemical Activity Homo sapiens
10 MPRIP 23164
Affinity Capture-MS Homo sapiens
11 DDX3X 1654
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
12 TRIM58 25893
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
13 KRT5 3852
Affinity Capture-MS Homo sapiens
14 DYNC2LI1 51626
Affinity Capture-MS Homo sapiens
15 TMOD3 29766
Affinity Capture-MS Homo sapiens
16 SRSF3 6428
Affinity Capture-MS Homo sapiens
17 DYNC1LI2 1783
Affinity Capture-MS Homo sapiens
View the network image/svg+xml
 Pathways in which TRIM58 is involved
No pathways found





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