Gene description for Csde1
Gene name
cold shock domain containing E1, RNA binding
Gene symbol
Csde1
Other names/aliases
AA960392 BC016898 D3Jfr1 mKIAA0885 unr
Species
Mus musculus
Database cross references - Csde1
ExoCarta
ExoCarta_229663
Vesiclepedia
VP_229663
Entrez Gene
229663
UniProt
Q91W50
Csde1 identified in exosomes derived from the following tissue/cell type
Colon cancer cells
37309723
Mast cells
17486113
T-cell lymphoma cells
37309723
Gene ontology annotations for Csde1
Experiment description of studies that identified Csde1 in exosomes
1
Experiment ID
907
MISEV standards
✔
EM
Biophysical techniques
✔
Tsg101|Sdcbp|Cd151|Gapdh|Lamp2|Cd81|Cd82|Cd9|Cd63|Cd80|Flot2|Tfrc|Rab35|Rab5a
Enriched markers
✔
HSPA5
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
37309723
Organism
Mus musculus
Experiment description
Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non-inducing cancer cells
Authors
"Chitti SV, Kang T, Fonseka P, Marzan AL, Stewart S, Shahi S, Bramich K, Ang CS, Pathan M, Gummadi S, Mathivanan S."
Journal name
Proteomics
Publication year
2023
Sample
Colon cancer cells
Sample name
C26
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
2
Experiment ID
15
MISEV standards
✔
EM
Biophysical techniques
✔
CD63
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
mrna
Identification method
Microarray
PubMed ID
17486113
Organism
Mus musculus Homo sapiens
Experiment description
Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.
Authors
"Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO"
Journal name
NCB
Publication year
2007
Sample
Mast cells
Sample name
MC9 Bone marrow-derived mast cells HMC-1
Isolation/purification methods
Filtration Ultracentrifugation Sucrose density gradient
Flotation density
1.11-1.21 g/mL
Molecules identified in the study
Protein mRNA miRNA
Methods used in the study
Mass spectrometry [MALDI TOF] Western blotting Microarray miRCURY LNA Array
3
Experiment ID
908
MISEV standards
✔
EM
Biophysical techniques
✔
Tsg101|Sdcbp|Cd151|Gapdh|Lamp2|Cd81|Cd82|Cd9|Cd63|Cd80|Flot2|Tfrc|Rab35|Rab5a
Enriched markers
✔
HSPA5
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
37309723
Organism
Mus musculus
Experiment description
Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non-inducing cancer cells
Authors
"Chitti SV, Kang T, Fonseka P, Marzan AL, Stewart S, Shahi S, Bramich K, Ang CS, Pathan M, Gummadi S, Mathivanan S."
Journal name
Proteomics
Publication year
2023
Sample
T-cell lymphoma cells
Sample name
EL4
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
Protein-protein interactions for Csde1
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
PLEKHA3
Affinity Capture-MS
Homo sapiens
2
Tdrd3
Co-fractionation
Mus musculus
3
EIF4H
7458
Affinity Capture-MS
Homo sapiens
4
DUSP11
Affinity Capture-MS
Homo sapiens
5
Tmem173
Proximity Label-MS
Mus musculus
6
Fzr1
Affinity Capture-MS
Mus musculus
7
Atxn1
Affinity Capture-MS
Mus musculus
8
Hoxd3
Two-hybrid
Mus musculus
9
Kctd13
Affinity Capture-MS
Mus musculus
10
DDX41
51428
Affinity Capture-MS
Homo sapiens
11
TXNDC9
10190
Affinity Capture-MS
Homo sapiens
12
ABHD16A
7920
Affinity Capture-MS
Homo sapiens
13
TMEM131
Affinity Capture-MS
Homo sapiens
14
LCOR
84458
Affinity Capture-MS
Homo sapiens
15
Unk
Affinity Capture-RNA
Mus musculus
16
Nfe2
Two-hybrid
Mus musculus
17
PABPC4L
132430
Affinity Capture-MS
Homo sapiens
18
Fancd2
Affinity Capture-MS
Mus musculus
19
STRAP
11171
Affinity Capture-MS
Homo sapiens
View the network
image/svg+xml
Pathways in which Csde1 is involved
No pathways found