Gene description for Rtn4
Gene name reticulon 4
Gene symbol Rtn4
Other names/aliases NI-250
Nogo
Nogo-A
Vp20
r
rat N
rat NogoA
Species Rattus norvegicus
 Database cross references - Rtn4
ExoCarta ExoCarta_83765
Vesiclepedia VP_83765
Entrez Gene 83765
UniProt Q9JK11  
 Rtn4 identified in sEVs derived from the following tissue/cell type
Adipocytes 25998041    
 Gene ontology annotations for Rtn4
Molecular Function
    protein binding GO:0005515 IPI
    ubiquitin protein ligase binding GO:0031625 IEA
    ubiquitin protein ligase binding GO:0031625 ISO
    protein homodimerization activity GO:0042803 ISO
    protein-containing complex binding GO:0044877 IDA
    cadherin binding GO:0045296 ISO
    metal ion binding GO:0046872 ISO
Biological Process
    blastocyst formation GO:0001825 IEA
    blastocyst formation GO:0001825 ISO
    leukocyte migration involved in inflammatory response GO:0002523 ISO
    leukocyte migration involved in inflammatory response GO:0002523 ISS
    endoplasmic reticulum organization GO:0007029 ISO
    nervous system development GO:0007399 ISO
    axonal fasciculation GO:0007413 IDA
    axonal fasciculation GO:0007413 IEA
    axonal fasciculation GO:0007413 ISO
    brain development GO:0007420 IBA
    positive regulation of epithelial cell migration GO:0010634 IEA
    positive regulation of epithelial cell migration GO:0010634 ISO
    negative regulation of neuron projection development GO:0010977 IDA
    response to activity GO:0014823 IEP
    olfactory nerve development GO:0021553 IEP
    cerebral cortex radial glia-guided migration GO:0021801 IEA
    cerebral cortex radial glia-guided migration GO:0021801 ISO
    cerebral cortex radial glia-guided migration GO:0021801 ISS
    central nervous system vasculogenesis GO:0022009 ISO
    central nervous system vasculogenesis GO:0022009 ISS
    neuron differentiation GO:0030182 IBA
    negative regulation of cell growth GO:0030308 ISO
    regulation of cell migration GO:0030334 ISO
    negative regulation of axon extension GO:0030517 IDA
    negative regulation of axon extension GO:0030517 IEA
    negative regulation of axon extension GO:0030517 ISO
    negative regulation of axon extension GO:0030517 ISS
    positive regulation of mammary gland epithelial cell proliferation GO:0033601 IEA
    positive regulation of mammary gland epithelial cell proliferation GO:0033601 ISO
    positive regulation of dopamine secretion GO:0033603 IMP
    positive regulation of toll-like receptor 9 signaling pathway GO:0034165 IEA
    positive regulation of toll-like receptor 9 signaling pathway GO:0034165 ISO
    positive regulation of toll-like receptor 9 signaling pathway GO:0034165 ISS
    positive regulation of Rac protein signal transduction GO:0035022 ISO
    positive regulation of Rac protein signal transduction GO:0035022 ISS
    cell migration involved in vasculogenesis GO:0035441 ISO
    cell migration involved in vasculogenesis GO:0035441 ISS
    negative regulation of neuron differentiation GO:0045665 IDA
    positive regulation of glial cell differentiation GO:0045687 IDA
    positive regulation of angiogenesis GO:0045766 ISO
    positive regulation of angiogenesis GO:0045766 ISS
    oligodendrocyte differentiation GO:0048709 IEP
    negative regulation of axonogenesis GO:0050771 IDA
    negative regulation of axonogenesis GO:0050771 IMP
    modulation of chemical synaptic transmission GO:0050804 IEA
    modulation of chemical synaptic transmission GO:0050804 ISO
    protein stabilization GO:0050821 IEA
    protein stabilization GO:0050821 ISO
    nuclear pore complex assembly GO:0051292 IEA
    nuclear pore complex assembly GO:0051292 ISO
    nuclear pore complex assembly GO:0051292 ISS
    positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction GO:0051897 IEA
    positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction GO:0051897 ISO
    regulation of nervous system development GO:0051960 ISO
    cardiac epithelial to mesenchymal transition GO:0060317 IEA
    cardiac epithelial to mesenchymal transition GO:0060317 ISO
    positive regulation of macrophage cytokine production GO:0060907 ISO
    positive regulation of macrophage cytokine production GO:0060907 ISS
    protein localization to lysosome GO:0061462 IEA
    protein localization to lysosome GO:0061462 ISO
    protein localization to lysosome GO:0061462 ISS
    negative regulation of neuron projection regeneration GO:0070571 IMP
    cellular response to hypoxia GO:0071456 ISO
    cellular response to hypoxia GO:0071456 ISS
    endoplasmic reticulum tubular network organization GO:0071786 ISO
    endoplasmic reticulum tubular network organization GO:0071786 ISS
    endoplasmic reticulum tubular network formation GO:0071787 IBA
    endoplasmic reticulum tubular network formation GO:0071787 IEA
    endoplasmic reticulum tubular network formation GO:0071787 ISO
    endoplasmic reticulum tubular network formation GO:0071787 ISS
    intracellular sphingolipid homeostasis GO:0090156 IEA
    intracellular sphingolipid homeostasis GO:0090156 ISO
    cell adhesion involved in sprouting angiogenesis GO:0120078 ISO
    cell adhesion involved in sprouting angiogenesis GO:0120078 ISS
    regulation of postsynapse assembly GO:0150052 IEA
    regulation of postsynapse assembly GO:0150052 ISO
    negative regulation of amyloid-beta formation GO:1902430 IEA
    negative regulation of amyloid-beta formation GO:1902430 ISO
    negative regulation of amyloid-beta formation GO:1902430 ISS
    positive regulation of neutrophil migration GO:1902624 ISO
    positive regulation of neutrophil migration GO:1902624 ISS
    positive regulation of macrophage migration GO:1905523 ISO
    positive regulation of macrophage migration GO:1905523 ISS
    positive regulation of protein localization to endoplasmic reticulum GO:1905552 IEA
    positive regulation of protein localization to endoplasmic reticulum GO:1905552 ISO
    positive regulation of ERBB3 signaling pathway GO:1905580 IEA
    positive regulation of ERBB3 signaling pathway GO:1905580 ISO
    positive regulation of artery morphogenesis GO:1905653 ISO
    positive regulation of artery morphogenesis GO:1905653 ISS
    endoplasmic reticulum tubular network membrane organization GO:1990809 IEA
    endoplasmic reticulum tubular network membrane organization GO:1990809 ISO
    endoplasmic reticulum tubular network membrane organization GO:1990809 ISS
    regulation of branching morphogenesis of a nerve GO:2000172 IDA
    regulation of branching morphogenesis of a nerve GO:2000172 IEA
    regulation of branching morphogenesis of a nerve GO:2000172 ISO
    positive regulation of hepatocyte proliferation GO:2000347 ISO
    positive regulation of hepatocyte proliferation GO:2000347 ISS
    negative regulation of vasculogenesis GO:2001213 ISO
    negative regulation of vasculogenesis GO:2001213 ISS
Subcellular Localization
    nuclear envelope GO:0005635 IEA
    nuclear envelope GO:0005635 ISO
    nuclear envelope GO:0005635 ISS
    endoplasmic reticulum GO:0005783 ISO
    endoplasmic reticulum membrane GO:0005789 IBA
    endoplasmic reticulum membrane GO:0005789 IDA
    endoplasmic reticulum membrane GO:0005789 IEA
    endoplasmic reticulum membrane GO:0005789 ISO
    plasma membrane GO:0005886 ISO
    postsynaptic density GO:0014069 IBA
    postsynaptic density GO:0014069 IEA
    postsynaptic density GO:0014069 ISO
    cell junction GO:0030054 ISO
    cell junction GO:0030054 ISS
    protein-containing complex GO:0032991 IDA
    cell projection GO:0042995 IEA
    cell projection GO:0042995 ISO
    neuron projection GO:0043005 IBA
    neuronal cell body GO:0043025 IDA
    neuronal cell body GO:0043025 IEA
    synapse GO:0045202 ISO
    synapse GO:0045202 ISS
    anchoring junction GO:0070161 IEA
    endoplasmic reticulum tubular network GO:0071782 ISO
    postsynapse GO:0098794 IDA
    postsynapse GO:0098794 ISO
    endoplasmic reticulum tubular network membrane GO:0098826 IEA
    endoplasmic reticulum tubular network membrane GO:0098826 ISO
    endoplasmic reticulum tubular network membrane GO:0098826 ISS
    postsynaptic density membrane GO:0098839 IDA
    glutamatergic synapse GO:0098978 IDA
    glutamatergic synapse GO:0098978 IEA
    glutamatergic synapse GO:0098978 ISO
 Experiment description of studies that identified Rtn4 in sEVs
1
Experiment ID 225
MISEV standards
EM
Biophysical techniques
GAPDH|CD63
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25998041    
Organism Rattus norvegicus
Experiment description Proteomic Analysis of Extracellular Vesicles Released by Adipocytes of Otsuka Long-Evans Tokushima Fatty (OLETF) Rats.
Authors "Lee JE, Moon PG, Lee IK, Baek MC"
Journal name Protein J
Publication year 2015
Sample Adipocytes
Sample name Adipocytes
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Western blotting
 Protein-protein interactions for Rtn4
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Dao  
Affinity Capture-MS Rattus norvegicus
2 Rtn1  
Affinity Capture-Western Rattus norvegicus
Affinity Capture-Western Rattus norvegicus
3 Fbxo21  
Affinity Capture-MS Rattus norvegicus
4 Itm2b 290364
Affinity Capture-MS Rattus norvegicus
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